[MINC-development] mnc2nii failure

[Cecile Madjar]

Hi MINC developers,

I just QC'ed some images that went through mnc2nii and it results in either
flipped NIfTI files or empty NIfTI files (mainly for 4D datasets
apparently).

I am using the latest MINC toolkit version but I believe mnc2nii has not be
worked on in a while if I am not mistaken.

We need mnc2nii to work to disseminate data that have been through a
defacing algorithm that ran on the MINC files. Would it be possible to
please fix this issue?

Additionally, when converting DWI MINC files into NIfTI files, two
additional files (.bvec and .bval) should be created to store the direction
information.

I can provide test MINC datasets on different modalities.

Let me know.
Thank you!

Cécile Madjar
MCIN lab
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