From matthijs at mouseimaging.ca  Wed Jul  3 16:55:46 2013
From: matthijs at mouseimaging.ca (Matthijs van Eede)
Date: Wed, 3 Jul 2013 16:55:46 -0400 (EDT)
Subject: [MINC-development] Fix to netcdf external data types in libminc
	development branch
In-Reply-To: <1097605073.545320.1372884567213.JavaMail.root@mouseimaging.ca>
Message-ID: <327349008.545468.1372884946828.JavaMail.root@mouseimaging.ca>

Greetings,

While compiling some minc tools using the development branch from libminc, I found that there was a netcdf external data type missing (NC_CHAR) in volume_io/Include/volume_io/volume.h, off-setting the values for the subsequent types (NC_SHORT, NC_INT... etc). I've created a patch and sent a pull request for it. 

Thanks!
Matthijs

From thierry at FreeBSD.org  Sun Jul  7 16:17:59 2013
From: thierry at FreeBSD.org (Thierry Thomas)
Date: Sun, 7 Jul 2013 22:17:59 +0200
Subject: [MINC-development] Trying to build release-2.2.00
Message-ID: <20130707201759.GA16591@graf.pompo.net>

Hello,

I'm trying to build minc 2.2.00, from the tarball available on GitHub at
https://github.com/BIC-MNI/minc/releases/release-2.2.00

I'm using cmake, and configure is OK, but it fails with the following
error:

...
Linking C executable invert_raw_image
[ 35%] Built target invert_raw_image
Scanning dependencies of target minc_modify_header
[ 35%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o
Linking C executable minc_modify_header
/usr/bin/ld: cannot open output file minc_modify_header: Is a directory
gmake[2]: *** [progs/minc_modify_header] Error 1
gmake[1]: *** [progs/CMakeFiles/minc_modify_header.dir/all] Error 2
gmake: *** [all] Error 2
*** [do-build] Error code 1

Is this a known problem? Is this the latest tarball?

Best regards,
-- 
Th. Thomas.

From a.janke at gmail.com  Mon Jul  8 10:28:13 2013
From: a.janke at gmail.com (Andrew Janke)
Date: Tue, 9 Jul 2013 00:28:13 +1000
Subject: [MINC-development] Trying to build release-2.2.00
In-Reply-To: <20130707201759.GA16591@graf.pompo.net>
References: <20130707201759.GA16591@graf.pompo.net>
Message-ID: <CAG0CB20mOyucnobbABV4wOH0xqM+wrzZieo38cbKtN14xHiSWw@mail.gmail.com>

Hi

The official 2.2 release is here:

   http://packages.bic.mni.mcgill.ca/tgz/minc-2.2.00.tar.gz

Thanks

a



On 8 July 2013 06:17, Thierry Thomas <thierry at freebsd.org> wrote:
> Hello,
>
> I'm trying to build minc 2.2.00, from the tarball available on GitHub at
> https://github.com/BIC-MNI/minc/releases/release-2.2.00
>
> I'm using cmake, and configure is OK, but it fails with the following
> error:
>
> ...
> Linking C executable invert_raw_image
> [ 35%] Built target invert_raw_image
> Scanning dependencies of target minc_modify_header
> [ 35%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o
> Linking C executable minc_modify_header
> /usr/bin/ld: cannot open output file minc_modify_header: Is a directory
> gmake[2]: *** [progs/minc_modify_header] Error 1
> gmake[1]: *** [progs/CMakeFiles/minc_modify_header.dir/all] Error 2
> gmake: *** [all] Error 2
> *** [do-build] Error code 1
>
> Is this a known problem? Is this the latest tarball?
>
> Best regards,
> --
> Th. Thomas.
> _______________________________________________
> MINC-development mailing list
> MINC-development at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-development

From vladimir.fonov at gmail.com  Mon Jul  8 11:36:11 2013
From: vladimir.fonov at gmail.com (Vladimir S. FONOV)
Date: Mon, 8 Jul 2013 11:36:11 -0400
Subject: [MINC-development] Trying to build release-2.2.00
In-Reply-To: <20130707201759.GA16591@graf.pompo.net>
References: <20130707201759.GA16591@graf.pompo.net>
Message-ID: <CAMCwi7NBHwvKaTvpaFge0d5bq8t9YCfVdFKm2UGACijey+zHHg@mail.gmail.com>

Hello,


I think this error happen when you try to run cmake in the source
directory - try building in a separate directory and it should work.

On Sun, Jul 7, 2013 at 4:17 PM, Thierry Thomas <thierry at freebsd.org> wrote:
> Hello,
>
> I'm trying to build minc 2.2.00, from the tarball available on GitHub at
> https://github.com/BIC-MNI/minc/releases/release-2.2.00
>
> I'm using cmake, and configure is OK, but it fails with the following
> error:
>
> ...
> Linking C executable invert_raw_image
> [ 35%] Built target invert_raw_image
> Scanning dependencies of target minc_modify_header
> [ 35%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o
> Linking C executable minc_modify_header
> /usr/bin/ld: cannot open output file minc_modify_header: Is a directory
> gmake[2]: *** [progs/minc_modify_header] Error 1
> gmake[1]: *** [progs/CMakeFiles/minc_modify_header.dir/all] Error 2
> gmake: *** [all] Error 2
> *** [do-build] Error code 1
>
> Is this a known problem? Is this the latest tarball?
>
> Best regards,
> --
> Th. Thomas.
> _______________________________________________
> MINC-development mailing list
> MINC-development at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-development



-- 
Best regards,

 Vladimir S. Fonov ~ vladimir <dot> fonov <at> gmail <dot> com

From thierry at FreeBSD.org  Mon Jul  8 13:27:41 2013
From: thierry at FreeBSD.org (Thierry Thomas)
Date: Mon, 8 Jul 2013 19:27:41 +0200
Subject: [MINC-development] Trying to build release-2.2.00
In-Reply-To: <CAMCwi7NBHwvKaTvpaFge0d5bq8t9YCfVdFKm2UGACijey+zHHg@mail.gmail.com>
References: <20130707201759.GA16591@graf.pompo.net>
	<CAMCwi7NBHwvKaTvpaFge0d5bq8t9YCfVdFKm2UGACijey+zHHg@mail.gmail.com>
Message-ID: <20130708172741.GA39177@graf.pompo.net>

Le lun  8 jul 13 ? 17:36:11 +0200, Vladimir S. FONOV <vladimir.fonov at gmail.com>
 ?crivait?:
> Hello,

Hello,

> I think this error happen when you try to run cmake in the source
> directory - try building in a separate directory and it should work.

Thanks, that did it!

Anyway, I'm rather going to work with the official tarball, as suggested
by Andrew Janke.

Best regards,
-- 
Th. Thomas.