[MINC-development] compiling Display from github

[Jason Lerch]

Related cmake question - how does one get it to accept CPPFLAGS (or other similar environment variables)? And how can I get cmake/make to show me the actual arguments used by gcc/g++?

Thanks,

Jason

On 2012-11-05, at 2:55 PM, Jason Lerch <jason at phenogenomics.ca> wrote:

> libminc (git master) lets me run cmake without issues then bombs here during make:
> 
> Linking C executable test_arg_parse
> Linking C executable mincapi
> [ 88%] Built target test_arg_parse
> Scanning dependencies of target test_mconv
> [ 89%] Building C object testdir/CMakeFiles/test_mconv.dir/test_mconv.c.o
> [ 89%] Built target mincapi
> Scanning dependencies of target test_speed
> [ 90%] Linking C executable test_mconv
> Building C object testdir/CMakeFiles/test_speed.dir/test_speed.c.o
> Linking C executable test_speed
> [ 90%] Built target test_mconv
> Scanning dependencies of target test_xfm
> [ 91%] Building C object testdir/CMakeFiles/test_xfm.dir/test_xfm.c.o
> Linking C executable test_xfm
> [ 91%] Built target test_speed
> Scanning dependencies of target fuzzy_volume_similarity
> [ 92%] Building CXX object ezminc/examples/CMakeFiles/fuzzy_volume_similarity.dir/fuzzy_volume_similarity.cpp.o
> /home/jason/git/libminc/ezminc/examples/fuzzy_volume_similarity.cpp:15:23: fatal error: minc_1_rw.h: No such file or directory
> compilation terminated.
> make[2]: *** [ezminc/examples/CMakeFiles/fuzzy_volume_similarity.dir/fuzzy_volume_similarity.cpp.o] Error 1
> make[1]: *** [ezminc/examples/CMakeFiles/fuzzy_volume_similarity.dir/all] Error 2
> make[1]: *** Waiting for unfinished jobs....
> [ 92%] Built target test_xfm
> make: *** [all] Error 2
> 
> Any hints? I'll dig into it if not.
> 
> Jason
> 
> On 2012-11-05, at 2:44 PM, "Vladimir S. FONOV" <vladimir.fonov at gmail.com> wrote:
> 
>> Hello,
>> 
>> use libminc ( https://github.com/BIC-MNI/libminc ) I just convert all CMakeLists to use that instead of minc.
>> 
>> I think, basically what you see on the screen is your config.log
>> 
>> On 12-11-05 02:35 PM, Jason Lerch wrote:
>>> Thanks Jordi and Vlad for the cmake tips! Onwards in my attempt to demonstrate my ignorance: tried to build minc from git master, and cmake produces the following:
>>> 
>>> <snip>
>>> -- Looking for include file pwd.h - found
>>> -- Found BISON: /usr/bin/bison (found version "2.5")
>>> -- Found FLEX: /usr/bin/flex (found version "2.5.35")
>>> CMake Error at progs/CMakeLists.txt:191 (INSTALL):
>>>  install FILES given directory "/home/jason/git/minc/progs/minchistory" to
>>>  install.
>>> 
>>> 
>>> CMake Error at progs/CMakeLists.txt:196 (INSTALL):
>>>  install PROGRAMS given directory "/home/jason/git/minc/progs/mincpik" to
>>>  install.
>>> 
>>> 
>>> -- Configuring incomplete, errors occurred!
>>> 
>>> (same error whether I type 'cmake CMakeLists.txt' or whether I add the -DCMAKE_INSTALL_PREFIX)
>>> 
>>> Is there an equivalent of config.log to see what it's trying to do? Does that error ring any bells?
>>> 
>>> Jason
>>> 
>>> 
>>> On 2012-11-05, at 1:54 PM, "Vladimir S. FONOV" <vladimir.fonov at gmail.com> wrote:
>>> 
>>>> Hello,
>>>> 
>>>> On 12-11-05 01:42 PM, Jordi Gutiérrez Hermoso wrote:
>>>>> Basically, you can use -D to set any CMake variable.
>>>>> 
>>>>>> and our --with-build-path?
>>>>> 
>>>>> This I don't know, but if you do "ccmake ." in your build directory,
>>>>> you'll get an ncurses interface for setting other CMake variables.
>>>>> They're mostly documented in the giant cmake manpage.
>>>> 
>>>> Basically each MINC package which provides a library (libminc,ebtks,bicpl etc) creates a configuration file, and you have to specify it's location using CMAKE variables. So, there is no direct equivalent to with-build-path anymore.
>>>> 
>>>> --
>>>> Best regards,
>>>> 
>>>> Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com
>>>> _______________________________________________
>>>> MINC-development mailing list
>>>> MINC-development at bic.mni.mcgill.ca
>>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-development
>>> 
>>> _______________________________________________
>>> MINC-development mailing list
>>> MINC-development at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-development
>>> 
>> 
>> 
>> -- 
>> Best regards,
>> 
>> Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com
>> _______________________________________________
>> MINC-development mailing list
>> MINC-development at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-development
> 
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