From smr at sumost.ca  Thu Oct 19 09:53:44 2006
From: smr at sumost.ca (Steve Robbins)
Date: Thu, 19 Oct 2006 08:53:44 -0500
Subject: [MINC-development] Fwd: Bug#394071: Trouble using minc headers with
	gcc >= 4.0
Message-ID: <20061019085344.vy7mlew4uggsooos@sumost.ca>

Hello MINC developers,

The provided patch (for MINC 1) replaces use of "Status" by  
"VIO_Status" to avoid a compiler error building freesurfer.  Does that  
appear to be a reasonable idea to you folks?  If so, shall I attempt  
to commit it?

Thanks,
-Steve

P.S. See http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=394071 for  
the patch.


----- Forwarded message from michael.hanke at gmail.com -----
     Date: Thu, 19 Oct 2006 10:37:12 +0200
     From: Michael Hanke <michael.hanke at gmail.com>
Reply-To: Michael Hanke <michael.hanke at gmail.com>, 394071 at bugs.debian.org
  Subject: Bug#394071: Trouble using minc headers with gcc >= 4.0
       To: Debian Bug Tracking System <submit at bugs.debian.org>

Package: minc
Severity: normal
Tags: patch

Hi,

I'm packaging a software that depends on the minc library. Compiling
the package I get an error when using gcc 4.0 or 4.1 (gcc 3.4 is fine):

---------------------------
make[2]: Entering directory `/home/michael/freesurfer/freesurfer-dev3/unix'
source='xvmri.c' object='xvmri.o' libtool=no \
         depfile='.deps/xvmri.Po' tmpdepfile='.deps/xvmri.TPo' \
         depmode=gcc3  \
         /usr/bin/gcc-4.0 -DHAVE_CONFIG_H -I. -I. -I..   
-I/usr/X11R6/include -I/usr/X11R6/include  -I/usr/X11R6/include
+-I../include -I../include/dicom -DLinux -DANSI        
-I/usr/include/core -I/usr/include/vcl -I/usr/include/v3p/netlib
+-g -O2 -Wall -Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE  
-I/usr/include/vxl/vcl -I/usr/include/cxl/core
+-I/usr/include/vxl/v3p/netlib -c `test -f 'xvmri.c' || echo './'`xvmri.c
In file included from /usr/include/volume_io.h:40,
                  from ../include/mri.h:20,
                  from xvmri.c:21:
/usr/include/volume_io/basic.h:161: error: two or more data types in  
declaration specifiers
make[2]: *** [xvmri.o] Error 1
make[2]: Leaving directory `/home/michael/freesurfer/freesurfer-dev3/unix'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/michael/freesurfer/freesurfer-dev3'
make: *** [all] Error 2
---------------------------

I contacted upstream about this issue and learned that they use a
patched version of minc to address this problem. They kindly provided me
with the patch (courtesy of Nick Schmansky).

I'm not completely sure whether one could handle this situation without
modifying minc, though.


Please consider including this patch into the Debian package.



Thanks,

Michael



-- System Information:
Debian Release: testing/unstable
   APT prefers testing
   APT policy: (600, 'testing'), (200, 'unstable')
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Shell:  /bin/sh linked to /bin/bash
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Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)

-- 
GPG key:  1024D/3144BE0F Michael Hanke
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----- End forwarded message -----



From smr at sumost.ca  Thu Oct 19 10:17:31 2006
From: smr at sumost.ca (Steve Robbins)
Date: Thu, 19 Oct 2006 09:17:31 -0500
Subject: [MINC-development] Fwd: Bug#394071: Trouble using minc
	headers	with gcc >= 4.0
In-Reply-To: <20061019085344.vy7mlew4uggsooos@sumost.ca>
References: <20061019085344.vy7mlew4uggsooos@sumost.ca>
Message-ID: <20061019091731.tcj6krmklrwcgkg4@sumost.ca>

Quoting Steve Robbins <smr at sumost.ca>:

> Hello MINC developers,
>
> The provided patch (for MINC 1) replaces use of "Status" by
> "VIO_Status" to avoid a compiler error building freesurfer.

On second thought, I suspect the problem can be fixed by defining  
VIO_PREFIX_NAMES.  I'll suggest that to the bug reporter and see what  
results.

-Steve


From a.janke at gmail.com  Thu Oct 19 10:24:27 2006
From: a.janke at gmail.com (Andrew Janke)
Date: Thu, 19 Oct 2006 10:24:27 -0400
Subject: [MINC-development] Fwd: Bug#394071: Trouble using minc headers
	with gcc >= 4.0
In-Reply-To: <20061019091731.tcj6krmklrwcgkg4@sumost.ca>
References: <20061019085344.vy7mlew4uggsooos@sumost.ca>
	<20061019091731.tcj6krmklrwcgkg4@sumost.ca>
Message-ID: <d747ed50610190724q394bd96at2015896cd03d7997@mail.gmail.com>

> > The provided patch (for MINC 1) replaces use of "Status" by
> > "VIO_Status" to avoid a compiler error building freesurfer.
>
> On second thought, I suspect the problem can be fixed by defining
> VIO_PREFIX_NAMES.  I'll suggest that to the bug reporter and see what
> results.

That would seem to be the easier fix.

-- 
Andrew Janke   (a.janke at gmail.com || http://a.janke.googlepages.com/)
Canada->Montreal                                   Cell: +1 (514) 924 2012