From minc-development@bic.mni.mcgill.ca Mon Jun 7 15:40:07 2004 From: minc-development@bic.mni.mcgill.ca (Robert VINCENT) Date: Mon, 7 Jun 2004 10:40:07 -0400 Subject: [MINC-development] new minc 2.0 beta Message-ID: Hi everyone, A new MINC 2.0 beta release is available for all interested parties. This is build 2.0.07. This release fixes several data portability issues between big-endian and little-endian machines. All existing MINC 2.0 format files _should_ be readable in the new library. You can download this version at: http://www.bic.mni.mcgill.ca/~bert/minc-2.0.07.tar.gz for more information see the NEWS and ChangeLog in the release, and visit the new MINC web page: http://www.bic.mni.mcgill.ca/software/minc/ Please send any problems, requests, or bug reports to me. Thanks! -bert From minc-development@bic.mni.mcgill.ca Mon Jun 28 18:37:33 2004 From: minc-development@bic.mni.mcgill.ca (Vicka Corey) Date: Mon, 28 Jun 2004 13:37:33 -0400 Subject: [MINC-development] mni_perllib-0.05 on the ppc64 Message-ID: <20040628133733.S18119@gate.nmr.mgh.harvard.edu> hi folks -- i am now working on a freesurfer ppc64 suse linux port. i'm trying to install mni_perllib-0.05 on the machine, and "make test" does not look entirely contented: ffff src/mni_perllib-0.05> make test rm -f t/datadir.t sed 's|@DEFAULT_DATA_DIR@|/usr/local/mni/data|' t/datadir.t.in > t/datadir.t chmod 444 t/datadir.t rm -f t/toy_ls sed 's|@PERL@|\#!/usr/bin/perl|' t/toy_ls.in > t/toy_ls chmod 555 t/toy_ls PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/checkdirs......ok t/checkfiles.....ok t/datadir........ok t/getopt.........ok t/mincutil.......spawn: exec of mincinfo failed: No such file or directory mincutil.t: crashed while running mincinfo (termination status=65280) t/mincutil.......dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED tests 1-22 Failed 22/22 tests, 0.00% okay t/miscutil.......ok t/numutil........ok t/pathutil.......ok t/searchfiles....ok t/spawn..........ok t/startup........ok Failed Test Stat Wstat Total Fail Failed List of Failed ------------------------------------------------------------------------------- t/mincutil.t 255 65280 22 22 100.00% 1-22 Failed 1/11 test scripts, 90.91% okay. 22/335 subtests failed, 93.43% okay. make: *** [test_dynamic] Error 29 ffff src/mni_perllib-0.05> ....anyone have any helpful thoughts...? thanks, --vicka From minc-development@bic.mni.mcgill.ca Tue Jun 29 16:02:46 2004 From: minc-development@bic.mni.mcgill.ca (Steve ROBBINS) Date: Tue, 29 Jun 2004 11:02:46 -0400 Subject: [MINC-development] mni_perllib-0.05 on the ppc64 In-Reply-To: <20040628133733.S18119@gate.nmr.mgh.harvard.edu>; from vicka@nmr.mgh.harvard.edu on Mon, Jun 28, 2004 at 01:37:33PM -0400 References: <20040628133733.S18119@gate.nmr.mgh.harvard.edu> Message-ID: <20040629110245.A14759903@shadow.bic.mni.mcgill.ca> On Mon, Jun 28, 2004 at 01:37:33PM -0400, Vicka Corey wrote: > hi folks -- i am now working on a freesurfer ppc64 suse linux port. > > i'm trying to install mni_perllib-0.05 on the machine, and "make test" > does not look entirely contented: > > ffff src/mni_perllib-0.05> make test > rm -f t/datadir.t > sed 's|@DEFAULT_DATA_DIR@|/usr/local/mni/data|' t/datadir.t.in > t/datadir.t > chmod 444 t/datadir.t > rm -f t/toy_ls > sed 's|@PERL@|\#!/usr/bin/perl|' t/toy_ls.in > t/toy_ls > chmod 555 t/toy_ls > PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t > t/checkdirs......ok > t/checkfiles.....ok > t/datadir........ok > t/getopt.........ok > t/mincutil.......spawn: exec of mincinfo failed: No such file or directory > mincutil.t: crashed while running mincinfo (termination status=65280) > t/mincutil.......dubious Is there a working copy of MINC installed on this machine? In particular, can you run "mincinfo" by hand? If so, you can get a little more info from the test script by running it manually: perl t/mincutil.t That will print out the status for each of the 22 tests. Focus on the first test that fails. -Steve From minc-development@bic.mni.mcgill.ca Tue Jun 29 17:49:32 2004 From: minc-development@bic.mni.mcgill.ca (Vicka Corey) Date: Tue, 29 Jun 2004 12:49:32 -0400 Subject: [MINC-development] mni_perllib-0.05 on the ppc64 In-Reply-To: <20040629110245.A14759903@shadow.bic.mni.mcgill.ca>; from stever@bic.mni.mcgill.ca on Tue, Jun 29, 2004 at 11:02:46AM -0400 References: <20040628133733.S18119@gate.nmr.mgh.harvard.edu> <20040629110245.A14759903@shadow.bic.mni.mcgill.ca> Message-ID: <20040629124932.G16991@gate.nmr.mgh.harvard.edu> you are so right. i ended up installing mni_autoreg_model-1.03, and now all is well. is there a relatively-thorough documentation anywhere of what assorted packages one might need from the mni collection? i had installed mni_autoreg awhile ago and not realized that it would depend on mni_autoreg_model. thanks, --vicka On Tue, Jun 29, 2004 at 11:02:46AM -0400, Steve ROBBINS wrote: > On Mon, Jun 28, 2004 at 01:37:33PM -0400, Vicka Corey wrote: > > hi folks -- i am now working on a freesurfer ppc64 suse linux port. > > > > i'm trying to install mni_perllib-0.05 on the machine, and "make test" > > does not look entirely contented: > > > > ffff src/mni_perllib-0.05> make test > > rm -f t/datadir.t > > sed 's|@DEFAULT_DATA_DIR@|/usr/local/mni/data|' t/datadir.t.in > t/datadir.t > > chmod 444 t/datadir.t > > rm -f t/toy_ls > > sed 's|@PERL@|\#!/usr/bin/perl|' t/toy_ls.in > t/toy_ls > > chmod 555 t/toy_ls > > PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t > > t/checkdirs......ok > > t/checkfiles.....ok > > t/datadir........ok > > t/getopt.........ok > > t/mincutil.......spawn: exec of mincinfo failed: No such file or directory > > mincutil.t: crashed while running mincinfo (termination status=65280) > > t/mincutil.......dubious > > Is there a working copy of MINC installed on this machine? In particular, > can you run "mincinfo" by hand? If so, you can get a little more info > from the test script by running it manually: > > perl t/mincutil.t > > That will print out the status for each of the 22 tests. Focus on the first > test that fails. > > -Steve > > _______________________________________________ > MINC-development mailing list > MINC-development@bic.mni.mcgill.ca > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-development