[MINC-development] linking errors on os x

[Jason Lerch]

The only thing which jumps out at me - though it might not make a 
difference - is the order that you link the libraries. -lnetcdf should 
come after -lminc. Again, don't know if this will make a difference ...

Jason

On Feb 6, 2004, at 6:00 PM, Vicka Corey wrote:

> hmm.  ok, i downloaded the new dist, and added flat_namespace to my 
> flags.
> but that doesn't seem to be it:
>
> gcc -I/Users/nmrroot/dev/include -I/usr/pubsw/include 
> -I/Users/nmrroot/dev/include -I/usr/pubsw/include -g -DDEBUG -DDarwin 
> -flat_namespace -DDECLARE_PROGNAME -c -o fsgdf.o fsgdf.c
> gcc -dynamiclib fsgdf.o fsgdf_wrap.o -L/Users/nmrroot/dev/lib/Darwin 
> -L/usr/pubsw/lib -lm -lutils -lunix -lhipsstubs -limage -lutils -lrgb 
> -ltiff -ljpeg -lz -ldicom -lvolume_io -lnetcdf -lminc -ltk8.3 -ltcl8.3 
> -lBLT -o libtclfsgdf.dylib
> ld: warning prebinding disabled because dependent library: 
> /sw/lib/libtiff.3.dylib is not prebound
> ld: common symbols not allowed with MH_DYLIB output format with the 
> -multi_module option
> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common 
> _minc_call_depth (size 4)
> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common 
> _minc_trash_var (size 4)
> /usr/pubsw/lib/libnetcdf.a(v2i.o) definition of common 
> _cdf_routine_name (size 4)
> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common 
> _minc_callers_ncopts (size 4)
> /usr/bin/libtool: internal link edit command failed
> make: *** [tcl] Error 1
>
> ...any ideas?
>
> thanks,
> --vicka
>
> On Sun, Jan 18, 2004 at 10:51:36AM -0500, Jason Lerch wrote:
>>
>> On Jan 16, 2004, at 2:23 PM, Vicka Corey wrote:
>>
>>> hi -- i've been trying to build freesurfer on an osx 10.3 laptop.  i
>>> am using
>>> the minc 1.2 cd from the workshop, and am running into some errors:
>>>
>>> building libfsgdf stuff
>>> /usr/bin/libtool: internal link edit command failed
>>> ld: warning prebinding disabled because dependent library:
>>> /sw/lib/libtiff.3.dylib is not prebound
>>> ld: common symbols not allowed with MH_DYLIB output format with the
>>> -multi_module option
>>> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common
>>> _minc_call_depth (size 4)
>>> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common
>>> _minc_trash_var (size 4)
>>> /usr/pubsw/lib/libnetcdf.a(v2i.o) definition of common
>>> _cdf_routine_name (size 4)
>>> /usr/pubsw/lib/libminc.a(minc_globdef.o) definition of common
>>> _minc_callers_ncopts (size 4)
>>> gmake[2]: *** [tcl] Error 1
>>>
>>>
>>> any ideas?
>>
>> Might be the OSX namespace issue. Try
>> setenv CC 'gcc -flat_namespace'
>> (or the same for CXX if you are using c++).
>>
>> No idea if this is your problem, but it is worh a try.
>>
>>>  also, any sign of the bugfixes from awhile back...?
>>>
>> Working on it as I write this.
>>
>> Jason
>>
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