From contact at hdfql.com Wed Jul 3 18:04:24 2019 From: contact at hdfql.com (HDFql) Date: Thu, 04 Jul 2019 00:04:24 +0200 Subject: [MINC-users] HDFql 2.1.0 Release Message-ID: We are happy to announce the release of HDFql 2.1.0! This version includes: - ADDED SUPPORT FOR DIRECT CHUNK WRITE/READ INTO/FROM DATASETS (TO GREATLY INCREASE PERFORMANCE) - thanks to Mark (University of Chicago, USA), Xiaoqiang (Paul Scherrer Institute, Switzerland), Ulrik (Diamond Light Source, UK), Tobias (Imperial College London, UK) and Stefan (Fermilab, USA) for the feedback. - ADDED WRAPPER FOR PYTHON VERSION 3.7.X - ADDED CAPABILITY TO OPEN AN HDF5 FILE, DEFINE/MANIPULATE/QUERY/INTROSPECT OBJECTS (I.E. GROUPS, DATASETS, ATTRIBUTES, (SOFT) LINKS OR EXTERNAL LINKS) AND, AFTERWARDS, CLOSE THE FILE IN ONE GO (IN ALL RELEVANT OPERATIONS - E.G. "CREATE DATASET", "INSERT" AND "SELECT") - UPDATED REFERENCE MANUAL (Please check the release notes for further details) For heads up on releases and the latest on HDFql, we welcome you to connect on twitter.com/hdfql [1] Links: ------ [1] http://twitter.com/hdfql From gabriel.devenyi at mcgill.ca Mon Jul 22 11:44:28 2019 From: gabriel.devenyi at mcgill.ca (Gabriel Allan Devenyi, Dr) Date: Mon, 22 Jul 2019 15:44:28 +0000 Subject: [MINC-users] GE Signa 3.x to MINC? Message-ID: Hi all, I have come into possession of a set of GE Signa 3.x files and find nothing is around to read them, can anyone suggest a conversion process? -- Gabriel A. Devenyi B.Eng. Ph.D. Research Computing Associate Computational Brain Anatomy Laboratory Cerebral Imaging Center Douglas Mental Health University Institute Affiliate, Department of Psychiatry McGill University t: 514.761.6131x4781 e: gabriel.devenyi at mcgill.ca From a.janke at gmail.com Mon Jul 22 16:47:31 2019 From: a.janke at gmail.com (Andrew Janke) Date: Tue, 23 Jul 2019 06:47:31 +1000 Subject: [MINC-users] GE Signa 3.x to MINC? In-Reply-To: References: Message-ID: Hi Gabriel, Many years ago I curated a collection of Peter Neelins converters from time gone past, there may be something in there for you. Some of it is in the conversion folder in minc-tools but not all of it as some was under NDA. Where I wasn't sure I didn't include it. I could get the folder to yourself and then you can be the new curator? :) No guarantee that it is what you want but it might get you closer. a On Tue, 23 Jul 2019 at 01:45, Gabriel Allan Devenyi, Dr wrote: > > Hi all, > > I have come into possession of a set of GE Signa 3.x files and find nothing is around to read them, can anyone suggest a conversion process? > > -- > Gabriel A. Devenyi B.Eng. Ph.D. > Research Computing Associate > Computational Brain Anatomy Laboratory > Cerebral Imaging Center > Douglas Mental Health University Institute > Affiliate, Department of Psychiatry > McGill University > t: 514.761.6131x4781 > e: gabriel.devenyi at mcgill.ca > _______________________________________________ > MINC-users at bic.mni.mcgill.ca > https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-users From gabriel.devenyi at mcgill.ca Tue Jul 23 10:25:03 2019 From: gabriel.devenyi at mcgill.ca (Gabriel Allan Devenyi, Dr) Date: Tue, 23 Jul 2019 14:25:03 +0000 Subject: [MINC-users] GE Signa 3.x to MINC? In-Reply-To: References: Message-ID: I somehow knew it would you you Andrew :) I'm happy to begin curation of the possibly NDA-encumbered converters! P.S. I found that ITK managed to read what I have. -- Gabriel A. Devenyi B.Eng. Ph.D. Research Computing Associate Computational Brain Anatomy Laboratory Cerebral Imaging Center Douglas Mental Health University Institute Affiliate, Department of Psychiatry McGill University t: 514.761.6131x4781 e: gabriel.devenyi at mcgill.ca On Mon, 22 Jul 2019 at 16:48, Andrew Janke > wrote: Hi Gabriel, Many years ago I curated a collection of Peter Neelins converters from time gone past, there may be something in there for you. Some of it is in the conversion folder in minc-tools but not all of it as some was under NDA. Where I wasn't sure I didn't include it. I could get the folder to yourself and then you can be the new curator? :) No guarantee that it is what you want but it might get you closer. a On Tue, 23 Jul 2019 at 01:45, Gabriel Allan Devenyi, Dr > wrote: > > Hi all, > > I have come into possession of a set of GE Signa 3.x files and find nothing is around to read them, can anyone suggest a conversion process? > > -- > Gabriel A. Devenyi B.Eng. Ph.D. > Research Computing Associate > Computational Brain Anatomy Laboratory > Cerebral Imaging Center > Douglas Mental Health University Institute > Affiliate, Department of Psychiatry > McGill University > t: 514.761.6131x4781 > e: gabriel.devenyi at mcgill.ca> > _______________________________________________ > MINC-users at bic.mni.mcgill.ca > https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-users _______________________________________________ MINC-users at bic.mni.mcgill.ca https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-users From a.janke at gmail.com Tue Jul 23 10:32:46 2019 From: a.janke at gmail.com (Andrew Janke) Date: Wed, 24 Jul 2019 00:32:46 +1000 Subject: [MINC-users] GE Signa 3.x to MINC? In-Reply-To: References: Message-ID: Good to hear re ITK. Consider yourself anointed, should be in your inbox. a On Wed, 24 Jul 2019 at 00:25, Gabriel Allan Devenyi, Dr wrote: > > I somehow knew it would you you Andrew :) > > I'm happy to begin curation of the possibly NDA-encumbered converters! > > P.S. I found that ITK managed to read what I have. > > > > -- > Gabriel A. Devenyi B.Eng. Ph.D. > Research Computing Associate > Computational Brain Anatomy Laboratory > Cerebral Imaging Center > Douglas Mental Health University Institute > Affiliate, Department of Psychiatry > McGill University > t: 514.761.6131x4781 > e: gabriel.devenyi at mcgill.ca > > > On Mon, 22 Jul 2019 at 16:48, Andrew Janke > wrote: > Hi Gabriel, > > Many years ago I curated a collection of Peter Neelins converters from > time gone past, there may be something in there for you. Some of it is > in the conversion folder in minc-tools but not all of it as some was > under NDA. Where I wasn't sure I didn't include it. I could get the > folder to yourself and then you can be the new curator? :) > > No guarantee that it is what you want but it might get you closer. > > a > > On Tue, 23 Jul 2019 at 01:45, Gabriel Allan Devenyi, Dr > > wrote: > > > > Hi all, > > > > I have come into possession of a set of GE Signa 3.x files and find nothing is around to read them, can anyone suggest a conversion process? > > > > -- > > Gabriel A. Devenyi B.Eng. Ph.D. > > Research Computing Associate > > Computational Brain Anatomy Laboratory > > Cerebral Imaging Center > > Douglas Mental Health University Institute > > Affiliate, Department of Psychiatry > > McGill University > > t: 514.761.6131x4781 > > e: gabriel.devenyi at mcgill.ca> > > _______________________________________________ > > MINC-users at bic.mni.mcgill.ca > > https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-users > _______________________________________________ > MINC-users at bic.mni.mcgill.ca > https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-users > _______________________________________________ > MINC-users at bic.mni.mcgill.ca > https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-users