[MINC-users] Fill ROI

[Gabriel A. Devenyi]

ANTs (included in minc-toolkit-v2) ImageMath has FillHoles (must be
completely enclosed holes to be filled)

On Tue, Aug 16, 2016 at 11:53 AM Andrew Janke <a.janke at gmail.com> wrote:

> Hi Pedro,
>
> Vladimir has some tools in ITK to do this but it depends on what you
> means by holes and if the remainder of the binary image is contiguous.
>
> If the latter then have a look at mincmorph, you can then frame the
> problem as removing the smallest contiguous object of the inverse of
> the binary mask. To do this use the Group and K[] - keep operations.
>
>
> a
>
> On 17 August 2016 at 01:47, Pedro Telles Cougo Pinto
> <ptcougopinto at gmail.com> wrote:
> > Hi, everyone
> >
> > Is there a way to fill holes in binary volumes? Such as in the -fill
> option from mincbeast.
> >
> > Thanks
> > Pedro
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>