[MINC-users] MINC2 on Mac OS X 10.5

[Burt Crépeault]

Ok, got a little further but not much. What I did so far on a fresh Leopard
install:

- installed all the packages from
http://packages.bic.mni.mcgill.ca/osx-10.5/
- installed fink
- from a terminal:
# sudo apt-get install hdf5
# sudo apt-get install netcdf
# registerdyld: Library not loaded: /usr/local/lib/libhdf5.0.dylib
  Referenced from: /usr/local/bic/bin/register
  Reason: image not found
# sudo ln -sf /sw/lib/libhdf5.0.0.0.dylib /usr/local/lib/libhdf5.0.dylib
# registerdyld: Library not loaded: /usr/local/lib/libhdf5.0.dylib
  Referenced from: /usr/local/bic/bin/register
  Reason: no suitable image found.  Did find:
    /usr/local/lib/libhdf5.0.dylib: mach-o, but wrong architecture
    /usr/local/lib/libhdf5.0.dylib: mach-o, but wrong architecture
- tried installing hdf5 through macports, got same errors

Is this a 32-bit vs. 64-bit error? Should I install Alex's 64-bit package
found at http://packages.bic.mni.mcgill.ca/osx-10.5-x86_64-alex/ ?

Burt.


On Mon, Jul 28, 2008 at 2:26 PM, Alexandre CARMEL-VEILLEUX <
acveilleux at mrs.mni.mcgill.ca> wrote:

> Andrew Janke's 10.5 packages assume that you have the following
> already installed:
>
>        libhdf5
>        libnetcdf
>
> He installs those with Fink. (http://www.finkproject.org/)
>
> Alex
>
> On Mon, Jul 28, 2008 at 02:03:40PM -0400, Burt Crépeault wrote:
> > Date: Mon, 28 Jul 2008 14:03:40 -0400
> > From: "Burt Crépeault" <burt.crepeault at crulrg.ulaval.ca>
> > To: "MINC users mailing list" <minc-users at bic.mni.mcgill.ca>
> > Subject: [MINC-users] MINC2 on Mac OS X 10.5
> >
> > Hi again,
> >
> > After downloading and installing all the packages from here on a fresh
> > install of Leopard, I'm still having problems. On most of them I get this
> > error message:
> >
> > dyld: Library not loaded: /usr/local/lib/libhdf5.0.dylib
> >   Referenced from: /usr/local/bic/bin/inormalize
> >   Reason: image not found
> > Trace/BPT trap
> >
> > (libhdf5.0.dylib is nowhere to be found on the Mac).
> >
> > I also got this error message attempting nu_correct:
> >
> > Can't locate MNI/Startup.pm in @INC (@INC contains: /Users/Simon/lib/perl
> > /System/Library/Perl/5.8.8/darwin-thread-multi-2level
> > /System/Library/Perl/5.8.8 /Library/Perl/5.8.8/darwin-thread-multi-2level
> > /Library/Perl/5.8.8 /Library/Perl
> > /Network/Library/Perl/5.8.8/darwin-thread-multi-2level
> > /Network/Library/Perl/5.8.8 /Network/Library/Perl
> > /System/Library/Perl/Extras/5.8.8/darwin-thread-multi-2level
> > /System/Library/Perl/Extras/5.8.8 /Library/Perl/5.8.6 /Library/Perl/5.8.1
> .)
> > at /usr/local/bic/bin/nu_correct line 37.
> > BEGIN failed--compilation aborted at /usr/local/bic/bin/nu_correct line
> 37.
> >
> > Obviously I'm missing some libraries and/or have wrongly set environment
> > variables.
> >
> > What are the dependencies for the minc packages to install and run
> properly?
> > Is there a readme somewhere about this? I looked all over the wiki but
> must
> > admit, coming from the outside, I feel kind of lost in there.
> >
> > Thanks,
> >
> > --
> > Burt Crépeault
> > Research Assistant
> > Centre de Recherche de l'Université Laval - Robert-Giffard
> > 418-663-5741, ext 6844
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www2.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>



-- 
Burt Crépeault
Research Assistant
Centre de Recherche de l'Université Laval - Robert-Giffard
418-663-5741, ext 6844

>


-- 
Burt Crépeault
Research Assistant
Centre de Recherche de l'Université Laval - Robert-Giffard
418-663-5741, ext 6844