From cecile.madjar at mcin.ca  Fri Apr 23 17:21:38 2021
From: cecile.madjar at mcin.ca (Cecile Madjar)
Date: Fri, 23 Apr 2021 17:21:38 -0400
Subject: [MINC-development] dcm2mnc issues
Message-ID: <CAMkiY3eizfR7OAab_50-sbfMUQYzT_Gpfr+51WR147EXNy1h5g@mail.gmail.com>

Hello,

A while back, we logged several critical dcm2mnc issues on GitHub. We are
still experiencing those issues in several of our LORIS projects. I wanted
to follow up with the MINC community regarding those issues to see if
dcm2mnc is still supported and if there will be any developments regarding
those issues.

Here is the list of logged issues:
https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar

As the imaging world progresses, we are encountering those problematic
issues in more of our LORIS projects and we need to provide our users
solutions regarding these issues. If there is no possibility to fix
dcm2mnc, then we may have to consider moving away from MINC, which we would
prefer avoiding for obvious reasons.

Please, let us know your thoughts on this. Help regarding these issues
would be greatly appreciated.

Best regards,

C?cile
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.bic.mni.mcgill.ca/pipermail/minc-development/attachments/20210423/cdb00ef3/attachment.html>

From jp at biospective.com  Thu Apr 29 13:04:57 2021
From: jp at biospective.com (Jean-Philippe Coutu)
Date: Thu, 29 Apr 2021 13:04:57 -0400
Subject: [MINC-development] dcm2mnc issues
In-Reply-To: <CABApf9HErmshPtOe2Kx2xqxjLpwuvA_C2OU1=9_wtMG6fpE0ww@mail.gmail.com>
References: <CAMkiY3eizfR7OAab_50-sbfMUQYzT_Gpfr+51WR147EXNy1h5g@mail.gmail.com>
 <CABApf9HErmshPtOe2Kx2xqxjLpwuvA_C2OU1=9_wtMG6fpE0ww@mail.gmail.com>
Message-ID: <CANHs=MdJr1j0WMLUF1ragyaNwJuU_RvaQ75=-hdFMghVGKB4Dw@mail.gmail.com>

Hi Cecile,

We have been modifying dcm2mnc actively internally over the past four years
without having the bandwidth to generate pull requests to the minctools
github repository. I am preparing a (sizeable) pull request to the
minctools github repository that includes all of our changes, which I
believe from my experience is likely to fix at least two of the three
issues you have opened.

Best,
JP

From: Cecile Madjar <cecile.madjar at mcin.ca>
> Date: Fri, Apr 23, 2021 at 5:22 PM
> Subject: [MINC-development] dcm2mnc issues
> To: MINC development discussion & planning <
> minc-development at bic.mni.mcgill.ca>, <minc-users at bic.mni.mcgill.ca>
>
>
> Hello,
>
> A while back, we logged several critical dcm2mnc issues on GitHub. We are
> still experiencing those issues in several of our LORIS projects. I wanted
> to follow up with the MINC community regarding those issues to see if
> dcm2mnc is still supported and if there will be any developments regarding
> those issues.
>
> Here is the list of logged issues:
> https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar
>
> As the imaging world progresses, we are encountering those problematic
> issues in more of our LORIS projects and we need to provide our users
> solutions regarding these issues. If there is no possibility to fix
> dcm2mnc, then we may have to consider moving away from MINC, which we would
> prefer avoiding for obvious reasons.
>
> Please, let us know your thoughts on this. Help regarding these issues
> would be greatly appreciated.
>
> Best regards,
>
> C?cile
>
>
> _______________________________________________
> MINC-development mailing list
> MINC-development at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.bic.mni.mcgill.ca/pipermail/minc-development/attachments/20210429/08d763f3/attachment.html>

From cecile.madjar at mcin.ca  Fri Apr 30 10:02:44 2021
From: cecile.madjar at mcin.ca (Cecile Madjar)
Date: Fri, 30 Apr 2021 10:02:44 -0400
Subject: [MINC-development] dcm2mnc issues
In-Reply-To: <CANHs=MdJr1j0WMLUF1ragyaNwJuU_RvaQ75=-hdFMghVGKB4Dw@mail.gmail.com>
References: <CAMkiY3eizfR7OAab_50-sbfMUQYzT_Gpfr+51WR147EXNy1h5g@mail.gmail.com>
 <CABApf9HErmshPtOe2Kx2xqxjLpwuvA_C2OU1=9_wtMG6fpE0ww@mail.gmail.com>
 <CANHs=MdJr1j0WMLUF1ragyaNwJuU_RvaQ75=-hdFMghVGKB4Dw@mail.gmail.com>
Message-ID: <CAMkiY3dnynsYOZ++gAGQe820Kc2oueWdf55pqXEoc9tcOwnL6w@mail.gmail.com>

Hi JP,

This is great news! Thank you. Let me know once it is part of the MINC
tools.

Is there a way to obtain the dcm2mnc binaries for Ubuntu and CentOS at
the same time by any chance?

Thank you again,

C?cile

On Thu, Apr 29, 2021 at 1:05 PM Jean-Philippe Coutu <jp at biospective.com>
wrote:

> Hi Cecile,
>
> We have been modifying dcm2mnc actively internally over the past four
> years without having the bandwidth to generate pull requests to the
> minctools github repository. I am preparing a (sizeable) pull request to
> the minctools github repository that includes all of our changes, which I
> believe from my experience is likely to fix at least two of the three
> issues you have opened.
>
> Best,
> JP
>
> From: Cecile Madjar <cecile.madjar at mcin.ca>
>> Date: Fri, Apr 23, 2021 at 5:22 PM
>> Subject: [MINC-development] dcm2mnc issues
>> To: MINC development discussion & planning <
>> minc-development at bic.mni.mcgill.ca>, <minc-users at bic.mni.mcgill.ca>
>>
>>
>> Hello,
>>
>> A while back, we logged several critical dcm2mnc issues on GitHub. We are
>> still experiencing those issues in several of our LORIS projects. I wanted
>> to follow up with the MINC community regarding those issues to see if
>> dcm2mnc is still supported and if there will be any developments regarding
>> those issues.
>>
>> Here is the list of logged issues:
>> https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar
>>
>> As the imaging world progresses, we are encountering those problematic
>> issues in more of our LORIS projects and we need to provide our users
>> solutions regarding these issues. If there is no possibility to fix
>> dcm2mnc, then we may have to consider moving away from MINC, which we would
>> prefer avoiding for obvious reasons.
>>
>> Please, let us know your thoughts on this. Help regarding these issues
>> would be greatly appreciated.
>>
>> Best regards,
>>
>> C?cile
>>
>>
>> _______________________________________________
>> MINC-development mailing list
>> MINC-development at bic.mni.mcgill.ca
>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development
>>
> _______________________________________________
> MINC-development mailing list
> MINC-development at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.bic.mni.mcgill.ca/pipermail/minc-development/attachments/20210430/f65df27b/attachment.html>