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Hi Cécile,
<div class=""><br class="">
</div>
<div class="">I just shared the dataset in the sftp in the following path: 2021_05_11/caseCecile_BIDS.zip</div>
<div class=""><br class="">
</div>
<div class="">Additionally, here is the output of the script after adding the prints in the PR 617:</div>
<div class=""><br class="">
</div>
<div class="">===</div>
<div class="">
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class="">/PROJECT/bin/mri/python_virtualenvs/loris-mri-python/lib/python3.6/site-packages/bids/layout/validation.py:46: UserWarning: The ability to pass arguments to BIDSLayout that control indexing
is likely to be removed in future; possibly as early as PyBIDS 0.14. This includes the `config_filename`, `ignore`, `force_index`, and `index_metadata` arguments. The recommended usage pattern is to initialize a new BIDSLayoutIndexer with these arguments,
and pass it to the BIDSLayout via the `indexer` argument.</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""> warnings.warn("The ability to pass arguments to BIDSLayout that control "</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0); min-height: 13px;" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class="">
</div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class="">Connecting to:</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""> database: DATABASE</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""> username: USERDATABASE</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""> hostname: 111.222.333.44</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""> port : 3306</span></div>
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<span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class="">
</div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0); min-height: 13px;" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class="">
</div>
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<span style="font-variant-ligatures: no-common-ligatures" class="">Executing query:</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""> SELECT Value FROM Config WHERE ConfigID = (SELECT ID FROM ConfigSettings WHERE Name = %s);</span></div>
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<span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class="">
</div>
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<span style="font-variant-ligatures: no-common-ligatures" class="">With arguments:</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""> ('default_bids_vl',)</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0); min-height: 13px;" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class="">
</div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0); min-height: 13px;" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class="">
</div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class="">Executing query:</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""> SELECT Value FROM Config WHERE ConfigID = (SELECT ID FROM ConfigSettings WHERE Name = %s);</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0); min-height: 13px;" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class="">
</div>
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<span style="font-variant-ligatures: no-common-ligatures" class="">With arguments:</span></div>
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<span style="font-variant-ligatures: no-common-ligatures" class=""> ('dataDirBasepath',)</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0); min-height: 13px;" class="">
<br class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""></span></div>
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<span style="font-variant-ligatures: no-common-ligatures" class="">Loading the BIDS dataset with BIDS layout library...</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class=""> => BIDS dataset loaded with BIDS layout</span></div>
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<span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class="">
</div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class="">Grepping candidates from the BIDS layout...</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class="">Validating the list of participants...</span></div>
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<span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class="">
</div>
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<span style="font-variant-ligatures: no-common-ligatures" class="">ERROR: Participant ID mismatch between participants.tsv and raw data found in the BIDS directory/n</span></div>
<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class="">CFTY720D2306.0102.00001is missing from the BIDS Layout</span></div>
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<span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class="">
</div>
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<span style="font-variant-ligatures: no-common-ligatures" class="">List of subjects parsed by the BIDS layout:</span></div>
</div>
<div class="">===</div>
<div class=""><br class="">
</div>
<div class="">Best,</div>
<div class="">Alfredo.</div>
<div class="">
<div><br class="">
<blockquote type="cite" class="">
<div class="">On May 11, 2021, at 12:01 PM, Cécile Madjar <<a href="mailto:cecile.madjar@mcin.ca" class="">cecile.madjar@mcin.ca</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">
<p class=""><span style="padding: 3px 10px; border-radius: 5px; color: #ffffff; font-weight: bold; display: inline-block; background-color: #ff0000;" class=""> External Email - Use Caution </span></p>
<div class=""><br class="webkit-block-placeholder">
</div>
Sounds like a plan. Let me know once it is uploaded and I will ask Nicolas to give me access.
<div class=""><br class="">
</div>
<div class="">Thanks!</div>
<div class=""><br class="">
</div>
<div class="">PS: you can view the diff on the PR and simply copy the code over to your files if easier<br class="">
<div class=""><br class="">
<blockquote type="cite" class="">
<div class="">On May 11, 2021, at 11:47 AM, Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@BWH.HARVARD.EDU" class="">AMORALESPINZON@BWH.HARVARD.EDU</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">
Hi Cecile,
<div class=""><br class="">
</div>
<div class="">In my testing dataset I have only one subject, I can share it with you in the LORIS sftp, does that work for you?</div>
<div class=""><br class="">
</div>
<div class="">In the mean time I will diff and pull your PR, and then execute it. I’ll send you the output asap.</div>
<div class=""><br class="">
</div>
<div class="">Best,</div>
<div class="">Alfredo. </div>
<div class="">
<div class=""><br class="">
<blockquote type="cite" class="">
<div class="">On May 11, 2021, at 11:36 AM, Cecile Madjar <<a href="mailto:cecile.madjar@mcin.ca" class="">cecile.madjar@mcin.ca</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<p style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class="">
<span style="padding: 3px 10px; border-top-left-radius: 5px; border-top-right-radius: 5px; border-bottom-right-radius: 5px; border-bottom-left-radius: 5px; color: rgb(255, 255, 255); font-weight: bold; display: inline-block; background-color: rgb(255, 0, 0);" class=""> External
Email - Use Caution </span></p>
<div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class="">
<br class="webkit-block-placeholder">
</div>
<span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class="">Hi
Alfredo,</span>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br class="">
</div>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
I do not have access to your dataset but is it possible that there is one or more sub-<ID> in the participants.tsv that are different from the sub-<ID> used in the directory structure? (a.k.a., folders sub-<ID> and filenames that should start with sub-<ID>.)</div>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br class="">
</div>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
This function is specifically cross checking the list provided in the participants.tsv file and the information gathered by the BIDSLayout library that read your BIDS dataset.</div>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br class="">
</div>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
I created a PR on LORIS-MRI to elaborate the log from the function you just sent: <a href="https://secure-web.cisco.com/17BHyJzFWfexg2et-D1qxjFw7-MsSpwCyZsKHDjuQa1Iruj-GV8fZRnaNOQe7rTfFaljPkHD9E0Kch6nwzSvbbe_48vUcKT3ozGDvxPfpe248W0Nml3EbqwefqTQo6V0gIBseIrXtJ4qwpUnrLVYpwZQyTPaDCbkm_NqrpLrBeXaHi-m5KCVluJqMYsb1DZBrqFL_XKJiIevFuiValC7eTehDRbTek9A5RvYsPN6hDTzEHFPQfCzzRD6W_iQSp80c_PbAKgxDUVLU2cePcP45pg/https%3A%2F%2Fgithub.com%2Faces%2FLoris-MRI%2Fpull%2F617" class="">https://github.com/aces/Loris-MRI/pull/617</a> Maybe
try adding the print statement in the diff of the PR to your code and rerun to get a better idea of what is going on?</div>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br class="">
</div>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
Let me know how it goes,</div>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br class="">
</div>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
Cécile</div>
<div class="" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br class="">
<div class=""><br class="">
<blockquote type="cite" class="">
<div class="">On May 10, 2021, at 4:15 PM, Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" class="">AMORALESPINZON@bwh.harvard.edu</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div class="" style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">
<div class="">Dear LorisDev team.</div>
<div class=""><br class="">
</div>
<div class="">I am running the BIDS uploading functionality of LORIS (from this PR suggested by Cecile:<span class="Apple-converted-space"> </span><a href="https://secure-web.cisco.com/1eWQtSLH8tHTpC1qsinKLnr4amf7Vdt1MLFNigX4jKdNz2mAoHV9ejLLcHZh1a0CUaUlzZMYTU9qzLaUEYYpyP1cl5UCR8e02WTmdMZUKXBNDeD8-cV2O5yTv8cgci7szP_MIGsvZ7FCjhqVmibPUnMFYbs6uYHGXZHOB5MsouWYLRHh89rJtQaFS8DOg4jfbwjp1bxwnO4FyuD3aKRv17dw9zoczaaXWnkbXXr87i6NQKYmA1NXhjM570IkyzSKuq-dlKj94vTZIlAChD5aFeg/https%3A%2F%2Fgithub.com%2Faces%2FLoris-MRI%2Fpull%2F558%2Ffiles" class="">https://github.com/aces/Loris-MRI/pull/558/files</a> )
but I’m getting the following error (see all the output below):</div>
<div class=""><br class="">
</div>
<div class="">===</div>
<div class="">
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">ERROR: Participant ID mismatch between participants.tsv and raw data found in the BIDS directory/n</span></div>
</div>
<div class="">===</div>
<div class=""><br class="">
</div>
<div class="">After some debugging I saw that the array subjects in the following line is empty:</div>
<a href="https://secure-web.cisco.com/1sAIMc1N1U7sTpJYVEGfljx8iP9AUjxof1GeCQwNPKhd82OAXEZmdHoYu7n3Uq8jLaO-quBK1igoIw9Oo7d5JVNCfb3MNy6u-cvR2KkL-rfKwSOW_ovP_V5YKydvDMoE1ltw4MO29keFq-JiTymIk8Wm8TbXeHKxF2njboK6-6bctzRI-5K2tWwz82zUZyzDxyFdn4zXPqI8AihHeuWQQG3GOGgPSbRP-GOUfwbu2eVmvL_P_ldZetO1qjKowic0Gqnt-a9XN_8GORD5BLNlxTw/https%3A%2F%2Fgithub.com%2Flaemtl%2FLoris-MRI%2Fblob%2F3742522fa46b0ee2b9e384e30650a0c1f425c7af%2Fpython%2Flib%2Fbidsreader.py%23L134" class="">https://github.com/laemtl/Loris-MRI/blob/3742522fa46b0ee2b9e384e30650a0c1f425c7af/python/lib/bidsreader.py#L134</a>
<div class=""><br class="">
</div>
<div class="">I thought the issue was that we have symbolic links in our folder structure but after setting a testing example I am getting the same exact error.</div>
<div class=""><br class="">
</div>
<div class="">Any ideas why this is happening? The error does not help much. I’m happy to share the testing case, with all the BIDS structure to a LORIS developer, if this is helpful.</div>
<div class=""><br class="">
</div>
<div class="">Looking forward to hearing from you.</div>
<div class=""><br class="">
</div>
<div class="">Best.</div>
<div class="">Alfredo.</div>
<div class=""><br class="">
</div>
<div class="">===</div>
<div class="">
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">/PROJECT/bin/mri/python_virtualenvs/loris-mri-python/lib/python3.6/site-packages/bids/layout/validation.py:46: UserWarning: The ability to pass arguments to BIDSLayout that control indexing
is likely to be removed in future; possibly as early as PyBIDS 0.14. This includes the `config_filename`, `ignore`, `force_index`, and `index_metadata` arguments. The recommended usage pattern is to initialize a new BIDSLayoutIndexer with these arguments,
and pass it to the BIDSLayout via the `indexer` argument.</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"> warnings.warn("The ability to pass arguments to BIDSLayout that control "</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span><br class="">
</div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">Connecting to:</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"> database: DATABASE</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"> username: USERDATABASE</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"> hostname: 111.222.333.444</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"> port : 3306</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span><br class="">
</div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span><br class="">
</div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">Executing query:</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"> SELECT Value FROM Config WHERE ConfigID = (SELECT ID FROM ConfigSettings WHERE Name = %s);</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span><br class="">
</div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">With arguments:</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"> ('default_bids_vl',)</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span><br class="">
</div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span><br class="">
</div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">Executing query:</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"> SELECT Value FROM Config WHERE ConfigID = (SELECT ID FROM ConfigSettings WHERE Name = %s);</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span><br class="">
</div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">With arguments:</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"> ('dataDirBasepath',)</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<br class="">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">Loading the BIDS dataset with BIDS layout library...</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<br class="">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"> => BIDS dataset loaded with BIDS layout</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span><br class="">
</div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">Grepping candidates from the BIDS layout...</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">Validating the list of participants...</span></div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo; min-height: 16px;">
<span class="" style="font-variant-ligatures: no-common-ligatures;"></span><br class="">
</div>
<div class="" style="margin: 0px; font-stretch: normal; font-size: 14px; line-height: normal; font-family: Menlo;">
<span class="" style="font-variant-ligatures: no-common-ligatures;">ERROR: Participant ID mismatch between participants.tsv and raw data found in the BIDS directory/n</span></div>
</div>
<div class="">===</div>
<div class=""><br class="">
</div>
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<div>The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.</div><br>
<p class="MsoNormal">Please note that this e-mail is not secure
(encrypted). If you do not wish to continue communication over
unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you
understand and accept this risk and wish to continue to communicate over
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