<div dir="ltr">Hi Alfredo,<div><br></div><div>It looks like the pybids is not able to read your BIDS dataset, which is why it returns an empty list of subjects.</div><div><br></div><div>I just tried on the python terminal to load your dataset on pybids and it does not find any subject or visit. This is probably due to the name of the subject that contains special characters. That will also be problematic for the session label of your dataset. I guess subjects in BIDS should remain alphanumerical only. Is it possible to modify your IDs to be alphanumerical?</div><div><br></div><div>Cécile</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, May 11, 2021 at 5:37 PM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" target="_blank">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">
<div style="word-wrap:break-word;line-break:after-white-space">
Hi Cécile,
<div><br>
</div>
<div>I just shared the dataset in the sftp in the following path: 2021_05_11/caseCecile_BIDS.zip</div>
<div><br>
</div>
<div>Additionally, here is the output of the script after adding the prints in the PR 617:</div>
<div><br>
</div>
<div>===</div>
<div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">/PROJECT/bin/mri/python_virtualenvs/loris-mri-python/lib/python3.6/site-packages/bids/layout/validation.py:46: UserWarning: The ability to pass arguments to BIDSLayout that control indexing
is likely to be removed in future; possibly as early as PyBIDS 0.14. This includes the `config_filename`, `ignore`, `force_index`, and `index_metadata` arguments. The recommended usage pattern is to initialize a new BIDSLayoutIndexer with these arguments,
and pass it to the BIDSLayout via the `indexer` argument.</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"> warnings.warn("The ability to pass arguments to BIDSLayout that control "</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">Connecting to:</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"> database: DATABASE</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"> username: USERDATABASE</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"> hostname: 111.222.333.44</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"> port : 3306</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">Executing query:</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"> SELECT Value FROM Config WHERE ConfigID = (SELECT ID FROM ConfigSettings WHERE Name = %s);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">With arguments:</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"> ('default_bids_vl',)</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">Executing query:</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"> SELECT Value FROM Config WHERE ConfigID = (SELECT ID FROM ConfigSettings WHERE Name = %s);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">With arguments:</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"> ('dataDirBasepath',)</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<br>
<span style="font-variant-ligatures:no-common-ligatures"></span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">Loading the BIDS dataset with BIDS layout library...</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures"> => BIDS dataset loaded with BIDS layout</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">Grepping candidates from the BIDS layout...</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">Validating the list of participants...</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">ERROR: Participant ID mismatch between participants.tsv and raw data found in the BIDS directory/n</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">CFTY720D2306.0102.00001is missing from the BIDS Layout</span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0);min-height:13px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">
<span style="font-variant-ligatures:no-common-ligatures">List of subjects parsed by the BIDS layout:</span></div>
</div>
<div>===</div>
<div><br>
</div>
<div>Best,</div>
<div>Alfredo.</div>
<div>
<div><br>
<blockquote type="cite">
<div>On May 11, 2021, at 12:01 PM, Cécile Madjar <<a href="mailto:cecile.madjar@mcin.ca" target="_blank">cecile.madjar@mcin.ca</a>> wrote:</div>
<br>
<div>
<div style="word-wrap:break-word;line-break:after-white-space">
<p><span style="padding:3px 10px;border-top-left-radius:5px;border-top-right-radius:5px;border-bottom-right-radius:5px;border-bottom-left-radius:5px;color:rgb(255,255,255);font-weight:bold;display:inline-block;background-color:rgb(255,0,0)"> External Email - Use Caution </span></p>
<div><br>
</div>
Sounds like a plan. Let me know once it is uploaded and I will ask Nicolas to give me access.
<div><br>
</div>
<div>Thanks!</div>
<div><br>
</div>
<div>PS: you can view the diff on the PR and simply copy the code over to your files if easier<br>
<div><br>
<blockquote type="cite">
<div>On May 11, 2021, at 11:47 AM, Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@BWH.HARVARD.EDU" target="_blank">AMORALESPINZON@BWH.HARVARD.EDU</a>> wrote:</div>
<br>
<div>
<div style="word-wrap:break-word;line-break:after-white-space">
Hi Cecile,
<div><br>
</div>
<div>In my testing dataset I have only one subject, I can share it with you in the LORIS sftp, does that work for you?</div>
<div><br>
</div>
<div>In the mean time I will diff and pull your PR, and then execute it. I’ll send you the output asap.</div>
<div><br>
</div>
<div>Best,</div>
<div>Alfredo. </div>
<div>
<div><br>
<blockquote type="cite">
<div>On May 11, 2021, at 11:36 AM, Cecile Madjar <<a href="mailto:cecile.madjar@mcin.ca" target="_blank">cecile.madjar@mcin.ca</a>> wrote:</div>
<br>
<div>
<p style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<span style="padding:3px 10px;border-top-left-radius:5px;border-top-right-radius:5px;border-bottom-right-radius:5px;border-bottom-left-radius:5px;color:rgb(255,255,255);font-weight:bold;display:inline-block;background-color:rgb(255,0,0)"> External
Email - Use Caution </span></p>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<br>
</div>
<span style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none;float:none;display:inline">Hi
Alfredo,</span>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<br>
</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
I do not have access to your dataset but is it possible that there is one or more sub-<ID> in the participants.tsv that are different from the sub-<ID> used in the directory structure? (a.k.a., folders sub-<ID> and filenames that should start with sub-<ID>.)</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<br>
</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
This function is specifically cross checking the list provided in the participants.tsv file and the information gathered by the BIDSLayout library that read your BIDS dataset.</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<br>
</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
I created a PR on LORIS-MRI to elaborate the log from the function you just sent: <a href="https://secure-web.cisco.com/17BHyJzFWfexg2et-D1qxjFw7-MsSpwCyZsKHDjuQa1Iruj-GV8fZRnaNOQe7rTfFaljPkHD9E0Kch6nwzSvbbe_48vUcKT3ozGDvxPfpe248W0Nml3EbqwefqTQo6V0gIBseIrXtJ4qwpUnrLVYpwZQyTPaDCbkm_NqrpLrBeXaHi-m5KCVluJqMYsb1DZBrqFL_XKJiIevFuiValC7eTehDRbTek9A5RvYsPN6hDTzEHFPQfCzzRD6W_iQSp80c_PbAKgxDUVLU2cePcP45pg/https%3A%2F%2Fgithub.com%2Faces%2FLoris-MRI%2Fpull%2F617" target="_blank">https://github.com/aces/Loris-MRI/pull/617</a> Maybe
try adding the print statement in the diff of the PR to your code and rerun to get a better idea of what is going on?</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<br>
</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
Let me know how it goes,</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<br>
</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
Cécile</div>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<br>
<div><br>
<blockquote type="cite">
<div>On May 10, 2021, at 4:15 PM, Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" target="_blank">AMORALESPINZON@bwh.harvard.edu</a>> wrote:</div>
<br>
<div>
<div style="word-wrap:break-word;line-break:after-white-space">
<div>Dear LorisDev team.</div>
<div><br>
</div>
<div>I am running the BIDS uploading functionality of LORIS (from this PR suggested by Cecile:<span> </span><a href="https://secure-web.cisco.com/1eWQtSLH8tHTpC1qsinKLnr4amf7Vdt1MLFNigX4jKdNz2mAoHV9ejLLcHZh1a0CUaUlzZMYTU9qzLaUEYYpyP1cl5UCR8e02WTmdMZUKXBNDeD8-cV2O5yTv8cgci7szP_MIGsvZ7FCjhqVmibPUnMFYbs6uYHGXZHOB5MsouWYLRHh89rJtQaFS8DOg4jfbwjp1bxwnO4FyuD3aKRv17dw9zoczaaXWnkbXXr87i6NQKYmA1NXhjM570IkyzSKuq-dlKj94vTZIlAChD5aFeg/https%3A%2F%2Fgithub.com%2Faces%2FLoris-MRI%2Fpull%2F558%2Ffiles" target="_blank">https://github.com/aces/Loris-MRI/pull/558/files</a> )
but I’m getting the following error (see all the output below):</div>
<div><br>
</div>
<div>===</div>
<div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">ERROR: Participant ID mismatch between participants.tsv and raw data found in the BIDS directory/n</span></div>
</div>
<div>===</div>
<div><br>
</div>
<div>After some debugging I saw that the array subjects in the following line is empty:</div>
<a href="https://secure-web.cisco.com/1sAIMc1N1U7sTpJYVEGfljx8iP9AUjxof1GeCQwNPKhd82OAXEZmdHoYu7n3Uq8jLaO-quBK1igoIw9Oo7d5JVNCfb3MNy6u-cvR2KkL-rfKwSOW_ovP_V5YKydvDMoE1ltw4MO29keFq-JiTymIk8Wm8TbXeHKxF2njboK6-6bctzRI-5K2tWwz82zUZyzDxyFdn4zXPqI8AihHeuWQQG3GOGgPSbRP-GOUfwbu2eVmvL_P_ldZetO1qjKowic0Gqnt-a9XN_8GORD5BLNlxTw/https%3A%2F%2Fgithub.com%2Flaemtl%2FLoris-MRI%2Fblob%2F3742522fa46b0ee2b9e384e30650a0c1f425c7af%2Fpython%2Flib%2Fbidsreader.py%23L134" target="_blank">https://github.com/laemtl/Loris-MRI/blob/3742522fa46b0ee2b9e384e30650a0c1f425c7af/python/lib/bidsreader.py#L134</a>
<div><br>
</div>
<div>I thought the issue was that we have symbolic links in our folder structure but after setting a testing example I am getting the same exact error.</div>
<div><br>
</div>
<div>Any ideas why this is happening? The error does not help much. I’m happy to share the testing case, with all the BIDS structure to a LORIS developer, if this is helpful.</div>
<div><br>
</div>
<div>Looking forward to hearing from you.</div>
<div><br>
</div>
<div>Best.</div>
<div>Alfredo.</div>
<div><br>
</div>
<div>===</div>
<div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">/PROJECT/bin/mri/python_virtualenvs/loris-mri-python/lib/python3.6/site-packages/bids/layout/validation.py:46: UserWarning: The ability to pass arguments to BIDSLayout that control indexing
is likely to be removed in future; possibly as early as PyBIDS 0.14. This includes the `config_filename`, `ignore`, `force_index`, and `index_metadata` arguments. The recommended usage pattern is to initialize a new BIDSLayoutIndexer with these arguments,
and pass it to the BIDSLayout via the `indexer` argument.</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures"> warnings.warn("The ability to pass arguments to BIDSLayout that control "</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">Connecting to:</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures"> database: DATABASE</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures"> username: USERDATABASE</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures"> hostname: 111.222.333.444</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures"> port : 3306</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">Executing query:</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures"> SELECT Value FROM Config WHERE ConfigID = (SELECT ID FROM ConfigSettings WHERE Name = %s);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">With arguments:</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures"> ('default_bids_vl',)</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">Executing query:</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures"> SELECT Value FROM Config WHERE ConfigID = (SELECT ID FROM ConfigSettings WHERE Name = %s);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">With arguments:</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures"> ('dataDirBasepath',)</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<br>
<span style="font-variant-ligatures:no-common-ligatures"></span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">Loading the BIDS dataset with BIDS layout library...</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<br>
<span style="font-variant-ligatures:no-common-ligatures"></span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures"> => BIDS dataset loaded with BIDS layout</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">Grepping candidates from the BIDS layout...</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">Validating the list of participants...</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo;min-height:16px">
<span style="font-variant-ligatures:no-common-ligatures"></span><br>
</div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo">
<span style="font-variant-ligatures:no-common-ligatures">ERROR: Participant ID mismatch between participants.tsv and raw data found in the BIDS directory/n</span></div>
</div>
<div>===</div>
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