<div dir="ltr">Right. But it will use what is in the sub-<PSCID> to create the new PSCID, so in your case, the script will try to create a candidate with PSCID=CFTY720D2306.0102.00001<div><br></div><div>Sorry for the confusion.</div><div><br></div><div>Cécile</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Apr 27, 2021 at 4:40 PM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div style="overflow-wrap: break-word;">
Hi Cecile,
<div><br>
</div>
<div>
<blockquote type="cite">
<div dir="ltr">
<div>Regarding the BIDS subject ID, they do need to be sub-<PSCID> other LORIS will not know to which subject the images should be attached to. Sorry.</div>
</div>
</blockquote>
</div>
<div>I thought the option “<span style="color:rgb(36,41,46);font-family:SFMono-Regular,Consolas,"Liberation Mono",Menlo,monospace;font-size:13.6px">-c, --createcandidate: to create BIDS candidates
</span><span style="font-family:SFMono-Regular,Consolas,"Liberation Mono",Menlo,monospace;font-size:13.6px;box-sizing:border-box">in</span><span style="color:rgb(36,41,46);font-family:SFMono-Regular,Consolas,"Liberation Mono",Menlo,monospace;font-size:13.6px">
LORIS (optional)</span>” would take care of this.</div>
<div><br>
</div>
<div>Regarding the visits/sessions, do they need to be created in advance as well?</div>
<div><br>
</div>
<div>Best,</div>
<div>Alfredo.</div>
<div>
<div><br>
<blockquote type="cite">
<div>On Apr 27, 2021, at 4:23 PM, Cecile Madjar <<a href="mailto:cecile.madjar@mcin.ca" target="_blank">cecile.madjar@mcin.ca</a>> wrote:</div>
<br>
<div>
<p><span style="padding:3px 10px;border-radius:5px;color:rgb(255,255,255);font-weight:bold;display:inline-block;background-color:rgb(255,0,0)"> External Email - Use Caution </span></p>
<div><br>
</div>
<div dir="ltr">Hi Alfredo,
<div><br>
</div>
<div>Indeed, the sites will need to be created in advance.</div>
<div><br>
Regarding the BIDS subject ID, they do need to be sub-<PSCID> other LORIS will not know to which subject the images should be attached to. Sorry.</div>
<div><br>
</div>
<div>Cécile</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Tue, Apr 27, 2021 at 3:48 PM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" target="_blank">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>Hi Cécile,
<div><br>
</div>
<div>Thank you for your response and the documentation. We are modifying our participants tsv and json file accordingly. I will pull to the PR you sent and test as soon as possible. I’ll keep you posted.</div>
<div><br>
</div>
<div>In the mean time, I have two questions:</div>
<div><br>
</div>
<div>1. I assume that I have to create the sites in advance if I want them to be used in the BIDS importing script, right?</div>
<div><br>
</div>
<div>2. Our subject Ids do not follow the CandID of LORIS, for instance one subject folder is named “sub-CFTY720D2306.0102.00001”, is this okay for LORIS?. I saw in the documentation that the participant ID is the PSCID of the candidate. However having
the PSCID here won’t make much sense as that would imply that all the BIDS files having the subjectID will have to be renamed. </div>
<div><br>
</div>
<div>Best,</div>
<div>Alfredo.</div>
<div>
<div><br>
<blockquote type="cite">
<div>On Apr 26, 2021, at 1:14 PM, Cecile Madjar <<a href="mailto:cecile.madjar@mcin.ca" target="_blank">cecile.madjar@mcin.ca</a>> wrote:</div>
<br>
<div>
<p><span style="padding:3px 10px;border-radius:5px;color:rgb(255,255,255);font-weight:bold;display:inline-block;background-color:rgb(255,0,0)"> External Email - Use Caution </span></p>
<div><br>
</div>
<div dir="ltr">Hi Alfredo,
<div><br>
</div>
<div>we are writing the documentation at the same time we are communicating. I created a PR with a detailed instruction and it contains answers to your questions: <a href="https://secure-web.cisco.com/1LYhiti2WmTM-2nhE7RMmvGsJO8YhxJJkTL3yNcudsFVZgRxKbH2hRDDtPIwcXz5zZHmnGfft9aik-0UCKzjojqhagkZ_T7p5ZZstuh4g9Y8Olr0k43DntX3a-b-GSXk2-Lcu17daBslxK3f9T2VW-QmtM2lwqcpBWxdtnOvMwYoGwz1W7AjD9t3rQsNahaUAAwX8ZYEoDQBf2-cK1jxAMAQmyq-yQvGezOYA3uarFPyuc5ujioMzxCQ8J_onOctQrE1tBn66KvEk-llDbkquiQ/https%3A%2F%2Fgithub.com%2Faces%2FLoris-MRI%2Fpull%2F615%2Ffiles" target="_blank">https://github.com/aces/Loris-MRI/pull/615/files</a></div>
<div><br>
</div>
<div>In short:</div>
<div>- for sex: any of M, F, female, male works (case insensitive so m, f, Female and Male works as well)</div>
<div>- for date of birth: format = YYYY-MM-DD</div>
<div>- for the participants.json, see the example given in the description of <a href="https://secure-web.cisco.com/1LYhiti2WmTM-2nhE7RMmvGsJO8YhxJJkTL3yNcudsFVZgRxKbH2hRDDtPIwcXz5zZHmnGfft9aik-0UCKzjojqhagkZ_T7p5ZZstuh4g9Y8Olr0k43DntX3a-b-GSXk2-Lcu17daBslxK3f9T2VW-QmtM2lwqcpBWxdtnOvMwYoGwz1W7AjD9t3rQsNahaUAAwX8ZYEoDQBf2-cK1jxAMAQmyq-yQvGezOYA3uarFPyuc5ujioMzxCQ8J_onOctQrE1tBn66KvEk-llDbkquiQ/https%3A%2F%2Fgithub.com%2Faces%2FLoris-MRI%2Fpull%2F615%2Ffiles" target="_blank">https://github.com/aces/Loris-MRI/pull/615/files</a></div>
<div><br>
</div>
<div>Note: the support of the project is new and will be part of release LORIS-MRI 24 but there is no release scheduled soon. In the meantime, two solutions:</div>
<div>- manually populate the project after the script has been run (not sure how realistic that is depending on your projects' need)</div>
<div>- pull the code from this PR: <a href="https://secure-web.cisco.com/1SeC5rj4ftibokIYqslvNVOQX0yELRiZqrCAn8Ns25dXnyiVDtSgl2M627NuVbiFk-JpzN5VyQdSDtRJ5zYcsaQLu4puhk4xHqmRzVUZE5lxqblUAIyfrDVyXw-XftgvOyELswWIIHomEBkN5dHPUiF4zMHXeaSW8SfyuvZA1FxI-mx2znto5YBooqfW9RjrSo5YwlOWpEQSqyDSNN-GXeVl5F88m1YKGiQl2g83Tn-LyLS1AcICOaY11rqw0LL6bnriDLZQjiO7RFA6MuDTy6g/https%3A%2F%2Fgithub.com%2Faces%2FLoris-MRI%2Fpull%2F558%2Ffiles" target="_blank">https://github.com/aces/Loris-MRI/pull/558/files</a>
that adds the support for the project insertion in the candidate and session tables</div>
<div><br>
</div>
<div>Hope this helps,</div>
<div><br>
</div>
<div>Cécile</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Mon, Apr 26, 2021 at 12:40 PM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" target="_blank">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
Dear LorisDev Team,<br>
<br>
I have three questions regarding the BIDS participants files for LORIS:<br>
<br>
1. What is the format that LORIS will be expecting for the column date_of_birth in the participants.json file?<br>
<br>
2. What are the values expected for the column sex in the participants.json file? M,F or Male, Female?<br>
<br>
3. Does LORIS need the participants.json file?<br>
<br>
Best regards,<br>
Alfredo.<br>
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<div>The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at <a href="http://www.massgeneralbrigham.org/complianceline" target="_blank">http://www.massgeneralbrigham.org/complianceline</a> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.</div><br>
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unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you
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