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Hi Cécile,
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<div class="">Thank you for pointing me to the template. Is there something else to be changed/set besides the mysql information?</div>
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<div class="">Best,</div>
<div class="">Alfredo.</div>
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<div class="">On Apr 19, 2021, at 5:53 PM, Cecile Madjar <<a href="mailto:cecile.madjar@mcin.ca" class="">cecile.madjar@mcin.ca</a>> wrote:</div>
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<p class=""><span style="padding: 3px 10px; border-radius: 5px; color: #ffffff; font-weight: bold; display: inline-block; background-color: #ff0000;" class=""> External Email - Use Caution </span></p>
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<div dir="ltr" class="">Hi Alfredo,
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<div class="">You will find an example of the config file in the following link: <a href="https://secure-web.cisco.com/14v9fDWJRa9ZMgF-c6sX4RVfdAEWb_znxnoMUUc0WPqPd_b_HimePfVJozn3mw53yD9Hucc__VfucNqdnp5TIeA47y5ceixh5ozU-NPEuFZ2XB1so3uOCQPKUgnDXnuninUzvjIbsaxsk-mviXcG7zyi-qSb_Xr8QVdzMqpMbC4PGJxgWsn-axkNtCPyecEZqPRNN47HsFC6ReyJA8QQMMt1n0g_EhPRP1lTEVA5UmdxXEMvtjqhxCjz4-8HPo__aI6y73i1_5p-iHntelYAa_Q/https%3A%2F%2Fgithub.com%2Faces%2FLoris-MRI%2Fblob%2Fmain%2Fdicom-archive%2Fdatabase_config_template.py" class="">https://github.com/aces/Loris-MRI/blob/main/dicom-archive/database_config_template.py</a> </div>
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<div class="">Indeed, this is a python-based config file, which is different from the prod file that is perl-based.</div>
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<div class="">Hope this helps,</div>
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<div class="">Cécile</div>
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<div dir="ltr" class="gmail_attr">On Mon, Apr 19, 2021 at 4:38 PM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" class="">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br class="">
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<div style="overflow-wrap: break-word;" class="">Dear LorisDev team,
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<div class="">In the section “<a href="https://secure-web.cisco.com/1baxhZvvaU0jSJOoyrJ9G2KofU_VeNAw5OsUE8lsMQJrZlNrDvMPRM1fSAVpu1AgXYR9MlZmhQwNdsHEZ94iEAY_GPZMwvRWxE7SpXqf-620lbhKdWDzOSFVjBCk5_w1ioTjpSSHZKouo5gYz6cFJy-KngOc0byf2dmHwsXZLOHI1bjsN4t1VVi1FH77psTswq-8GVIBIeZi0TEFmmF8AXOXFLbxZFSU5ci1cM7UD--16yMhwGe2Dli_ky-EkYrWYgyFH-PkDTOmdCQtIBjHFiw/https%3A%2F%2Fgithub.com%2Faces%2FLoris-MRI%2Fblob%2Fmain%2Fdocs%2F05-PipelineLaunchOptions.md%2352---pipeline-launch-for-bids-datasets" target="_blank" class="">5.2
- Pipeline Launch for BIDS datasets</a>” the command line bids_import.py requires the option -p which is defined as </div>
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<pre style="box-sizing:border-box;font-family:SFMono-Regular,Consolas,"Liberation Mono",Menlo,monospace;font-size:13.6px;margin-top:0px;margin-bottom:0px;padding:16px;overflow:auto;line-height:1.45;border-radius:6px;word-break:normal;color:rgb(36,41,46);font-variant-ligatures:normal" class=""><pre style="box-sizing:border-box;font-family:SFMono-Regular,Consolas,"Liberation Mono",Menlo,monospace;font-size:13.6px;margin-top:0px;margin-bottom:0px;padding:16px;overflow:auto;line-height:1.45;border-radius:6px;word-break:normal;font-variant-ligatures:normal" class="">-p, --profile <span style="box-sizing:border-box" class="">:</span> name of the python database config file <span style="box-sizing:border-box" class="">in</span> dicom-archive/.loris-mri</pre></pre>
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<div class="">In the example provided this option has the value “database_config.py”, is this actually a python file? Where can I find it? How can I create it? The only file I have always had in .loris-mri is prod.</div>
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<div class="">Thank you in advance for your help.</div>
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<div class="">Regards,</div>
<div class="">Alfredo.</div>
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