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Hi Zia,
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<div class="">The issue persists, see the times in the attached image <font color="#ff1f00" class="">
(site_recruitment | jquery | 3.4 min)</font>. I am now running LORIS v23. </div>
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</div>
<div class="">How can we check what is happening? We can a have a Zoom call where I can share my screen if needed.</div>
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</div>
<div class="">Regards,</div>
<div class="">Alfredo.</div>
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</div>
<div class=""> <img apple-inline="yes" id="81BD5D98-C55E-4992-9FEC-B0483C3DFACE" src="cid:9491381B-A96A-43E2-93CC-CED1300E544D" class=""></div>
<div class="">
<div><br class="">
<blockquote type="cite" class="">
<div class="">On Feb 2, 2021, at 9:49 AM, Zia Mohades <<a href="mailto:zia.mohades@mcin.ca" class="">zia.mohades@mcin.ca</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<p class=""><span style="padding: 3px 10px; border-radius: 5px; color: #ffffff; font-weight: bold; display: inline-block; background-color: #ff0000;" class=""> External Email - Use Caution </span></p>
<div class=""><br class="webkit-block-placeholder">
</div>
<div dir="ltr" class="">Hi Alfredo,
<div class=""><br class="">
</div>
<div class="">Please let me know if your issue has been resolved.</div>
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</div>
<div class="">Thank you</div>
<div class=""><br class="">
</div>
</div>
<br class="">
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Mon, Jan 25, 2021 at 8:35 AM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" class="">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div style="overflow-wrap: break-word;" class="">
<div dir="auto" style="overflow-wrap: break-word;" class="">Dear Zia,
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</div>
<div class="">The issue is when loading the landing page once a user had logged in into LORIS. The systems remains unresponsive until the graph is loaded. I am moving to the last version of LORIS right now, I will inform if the issues persists in the latests
version.</div>
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</div>
<div class="">Thank you.</div>
<div class=""><br class="">
</div>
<div class="">Alfredo.</div>
<div class="">
<div class=""><br class="">
<blockquote type="cite" class="">
<div class="">On Jan 7, 2021, at 3:34 PM, Zia Mohades <<a href="mailto:zia.mohades@mcin.ca" target="_blank" class="">zia.mohades@mcin.ca</a>> wrote:</div>
<br class="">
<div class="">
<p style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none" class="">
<span style="padding:3px 10px;border-radius:5px;color:rgb(255,255,255);font-weight:bold;display:inline-block;background-color:rgb(255,0,0)" class=""> External Email - Use Caution </span></p>
<div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none" class="">
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</div>
<div dir="ltr" style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none" class="">
Hello,
<div class=""><br class="">
</div>
<div class="">Regarding your first question. As Dave mentioned we haven't experienced any issues with loading when we click on the link/site under the graph. We did however noticed some formatting issues which should be fixed in the new version of LORIS but
nothing related to the loading functionality.</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class="">Thank you</div>
<div class=""><br class="">
</div>
<br class="">
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Wed, Jan 6, 2021 at 12:51 PM Dave MacFarlane <<a href="mailto:dave.macfarlane@mcin.ca" target="_blank" class="">dave.macfarlane@mcin.ca</a>> wrote:<br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="ltr" class="">
<div dir="ltr" class="">On Wed, Jan 6, 2021 at 12:30 PM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" target="_blank" class="">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br class="">
</div>
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div class="">
<div class="">Dear LorisDev team,</div>
<div class=""><br class="">
</div>
<div class="">We are experiencing the following issues in Loris. Could you please help me or guide me on how address them.</div>
<div class=""><br class="">
</div>
<div class="">1. After login into LORIS, the webpage does not allow the user to go to any link until the graph under "Study Progression" is created. This is taking more than one minute to load. I guess this is because we have hundreds of centers. Is it possible
to remove the graph from the landing page? (See attachment)</div>
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</div>
</div>
</blockquote>
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<div class="">I don't believe it should take that long even with a large number of sites. I'll let someone from CCNA handle this part of the question since they also have hundreds of sites and might have more insight..</div>
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</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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<div class=""></div>
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</div>
<div class=""><br class="">
</div>
<div class="">2. When using the Data Query Tool the front-end crashes with error 500.</div>
<div class=""><br class="">
</div>
<div class="">
<div class="">This is what I can see in the loris-error.log</div>
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</div>
<div class="">===</div>
<div class="">
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo" class="">
<span style="font-variant-ligatures:no-common-ligatures;background-color:rgb(19,150,163)" class="">[</span><span style="font-variant-ligatures:no-common-ligatures" class="">Wed Jan 06 12:23:31.920274 2021</span><span style="font-variant-ligatures:no-common-ligatures;background-color:rgb(19,150,163)" class="">]</span><span style="font-variant-ligatures:no-common-ligatures" class=""> [php7:error]
[pid 12100] [client<span class=""> </span><a href="http://secure-web.cisco.com/1WEkcMysyWStSVz7qKpBtYZtz-xrpp1mPaByBjiqSPA9SZmeKHvGSdf3rXamfd2uDcyk9mX81q9xtiBMKgVKyYR4W-1DBZqDKCk4UB2yFtZodmXth8cvg6mRuv8aZ2OY7zrD4ceY6Bes_NzGusndhEPxln-qfV2pPRZutvE8WIGrAkktkyqbT2932WsPmQrUJ7Aw_BNaLRnmyvD8kpuuzmVtIyfXe3WzGxt0DPppl0YkPeNvdZTlHVtv0OQkEgOOmfmxZjJnwbymbl6gNZCS4Aw/http%3A%2F%2F216.15.126.108%3A56023" target="_blank" class="">216.15.126.108:56023</a>]
PHP Fatal error: Uncaught ConfigurationException: NDB_Factory::CouchDB() requires all parameters to be supplied. in /var/www/loris/php/libraries/NDB_Factory.class.inc:297\nStack trace:\n#0 /var/www/loris/modules/dataquery/php/dataquery.class.inc(59): NDB_Factory->couchDB('%COUCH_DATABASE...',
'%COUCH_HOSTNAME...', 0, '%COUCH_USERNAME...', '%COUCH_PASSWORD...')\n#1 /var/www/loris/php/libraries/NDB_Form.class.inc(188): LORIS\\dataquery\\Dataquery->setup()\n#2 /var/www/loris/src/Middleware/UserPageDecorationMiddleware.php(171): NDB_Form->handle(Object(Zend\\Diactoros\\ServerRequest))\n#3
/var/www/loris/src/Middleware/PageDecorationMiddleware.php(49): LORIS\\Middleware\\UserPageDecorationMiddleware->process(Object(Zend\\Diactoros\\ServerRequest), Object(LORIS\\dataquery\\Dataquery))\n#4 /var/www/loris/php/libraries/NDB_Page.class.inc(659):
LORIS\\Middleware\\PageDecorationMiddleware->process(Object(Zend\\Diactoros\\ServerRequest), Object(LORIS\\dataquery\\Dataquery))\n#5 /var/www/loris/php/libraries/Module.class.inc(341): NDB_Page->process(Object(Zend\\ in /var/www/loris/php/libraries/NDB_Factory.class.inc
on line 297, referer:<span class=""> </span><a href="https://secure-web.cisco.com/1RSIugAJMQUGXvusoQetBHcf0j84JY0S6EgPaD1_LfdQpRlhPtrtNIEnrXDjYllpX2Okn2abcPbPraSpdkPmoEybMpPc-Km4z6MVi-cEQvYUmv2DORKXippBAeVsHB0tHs55X02iHpm3xNKlG5T2Zt2wCngYaxfNWxR4sC-mDMLsEIJzdQPZiyVJUPUNF5LVPRVKOnErvdPDgIPq3Ce3Y24ceSJTkt0CRJzTNusjrVm646V02S1_3iAdJswiSHhyaWSbCfXHWlwEigX-r1r7_FQ/https%3A%2F%2Fipmsa-loris.bic.mni.mcgill.ca%2Fimaging_browser%2FviewSession%2F%3FsessionID%3D85935" target="_blank" class="">https://ipmsa-loris.bic.mni.mcgill.ca/imaging_browser/viewSession/?sessionID=85935</a></span></div>
</div>
<div class="">===</div>
</div>
<div class=""><br class="">
</div>
</div>
</blockquote>
<div class=""><br class="">
</div>
<div class="">The DQT currently requires a CouchDB backend with the data imported into it. It looks like the CouchDB hostname/database/username/ password/etc aren't set up. The Configurations section of the file modules/dataquery/README.md should have more
information about the setup required. Is the `<CouchDB>` tag in project/config.xml setup as described in step 3 of that document?<span class=""> </span><br class="">
</div>
<div class=""><br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div class="">
<div class=""></div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class="">3. In the statistics section (Reports -> Statistics) I can see the following message at the bottom of the page:</div>
<div class=""><br class="">
</div>
<div class="">===</div>
<div class="">
<h2 style="box-sizing:border-box;margin-bottom:10px;font-weight:500;margin-top:20px;color:rgb(51,51,51);font-size:30px;font-family:"Helvetica Neue",Helvetica,Arial,sans-serif;line-height:1.1;font-variant-ligatures:normal;background-color:rgb(255,255,255)" class="">
Oops</h2>
<p style="box-sizing:border-box;margin:0px 0px 10px;color:rgb(51,51,51);font-family:"Helvetica Neue",Helvetica,Arial,sans-serif;font-size:14px;font-variant-ligatures:normal;background-color:rgb(255,255,255)" class="">
It seems like the scan type selected does not have a corresponding column in the mri_parameter_form table in the database.<br style="box-sizing:border-box" class="">
In order to display the statistics for the scan type, make sure the mri_parameter_form table contains a column in the exact format SCANTYPE_Scan_done</p>
</div>
<div class="">===</div>
<div class=""><br class="">
</div>
</div>
</blockquote>
<div class=""><br class="">
</div>
<div class="">The statistics page using an instrument named "mri_parameter_form" to determine numbers for the scan done. For each scan type in the mri_scan_types table* it expects there to be a column named "SCANTYPE_Scan_Done" to use for reporting statistics.
I believe there's somewhere in the MRI documentation that goes into more depth but I'm not entirely sure where, maybe Cecile can chime in..<br class="">
</div>
<div class=""><br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div class="">
<div class=""></div>
<div class="">In the loris-error.log a see a large list of the following messages:</div>
<div class=""><br class="">
</div>
<div class="">===</div>
<div class="">
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo" class="">
<span style="font-variant-ligatures:no-common-ligatures" class="">[Wed Jan 06 12:26:24.730900 2021] [php7:notice] [pid 25824] [client<span class=""> </span><a href="http://secure-web.cisco.com/194rpS3q9XNXxClvnkwJk3Z5TXDYQpXdnJTmjmtMl0rW6vlUQEBQ8jnizUEJXqsPLQZcrPYqfCmX2WJTnp3nbXr5cVnEgCU8VA2JkoAWYhp3kgMry9HCaKnqYtfk4JpPMefzKgVd51jBzXzOCuvJIFpJYxFjIcZKtr3exwshNEd_qp-CKLKgW6jrpJOdMJ1oi5p0T_OtI91aMZo_Jz2piFL5ozxblRcq0dwB8GHVUChwyf71wqsVzCO7DtSOwr8oum5QXdnAvSQRVRl8WFapVmg/http%3A%2F%2F216.15.126.108%3A56738" target="_blank" class="">216.15.126.108:56738</a>]
PHP Notice: Undefined index: Female in /var/www/loris/modules/statistics/php/stats_demographic.class.inc on line 137, referer:<span class=""> </span><a href="https://secure-web.cisco.com/1aW5ReU5kAMfdryzMa60cZ7x3ix4DOm9RDXsWQ9OW63HzvgMvrO8HyVV3oMaPfYYwVqN6aeUrpnadfu93Z3s3G-LudGQUVVKEbi6NBbvaxNUzXFvgvnp3SSSeHMd5qZhvpFr2JV8Ve9jZDAP0rFkfXoPUT6SVoZ8xWd0Gsnxf1ADisP3ucBGZlwIpFb3lDNuEYdn2D48-jDWyMKRxSCPbuOlWgbyVYZ2xMsedRJPsi1OlNoNqBoR1Oy67jnvcSROGs3EYjfWI9bZ3juyNtOfZiA/https%3A%2F%2Fipmsa-loris.bic.mni.mcgill.ca%2Fstatistics%2F" target="_blank" class="">https://ipmsa-loris.bic.mni.mcgill.ca/statistics/</a></span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo" class="">
<span style="font-variant-ligatures:no-common-ligatures" class="">[Wed Jan 06 12:26:24.730935 2021] [php7:notice] [pid 25824] [client<span class=""> </span><a href="http://secure-web.cisco.com/194rpS3q9XNXxClvnkwJk3Z5TXDYQpXdnJTmjmtMl0rW6vlUQEBQ8jnizUEJXqsPLQZcrPYqfCmX2WJTnp3nbXr5cVnEgCU8VA2JkoAWYhp3kgMry9HCaKnqYtfk4JpPMefzKgVd51jBzXzOCuvJIFpJYxFjIcZKtr3exwshNEd_qp-CKLKgW6jrpJOdMJ1oi5p0T_OtI91aMZo_Jz2piFL5ozxblRcq0dwB8GHVUChwyf71wqsVzCO7DtSOwr8oum5QXdnAvSQRVRl8WFapVmg/http%3A%2F%2F216.15.126.108%3A56738" target="_blank" class="">216.15.126.108:56738</a>]
PHP Notice: Undefined index: OLYMPUS_CLINICAL_SCREENING in /var/www/loris/modules/statistics/php/stats_demographic.class.inc on line 133, referer:<span class=""> </span><a href="https://secure-web.cisco.com/1aW5ReU5kAMfdryzMa60cZ7x3ix4DOm9RDXsWQ9OW63HzvgMvrO8HyVV3oMaPfYYwVqN6aeUrpnadfu93Z3s3G-LudGQUVVKEbi6NBbvaxNUzXFvgvnp3SSSeHMd5qZhvpFr2JV8Ve9jZDAP0rFkfXoPUT6SVoZ8xWd0Gsnxf1ADisP3ucBGZlwIpFb3lDNuEYdn2D48-jDWyMKRxSCPbuOlWgbyVYZ2xMsedRJPsi1OlNoNqBoR1Oy67jnvcSROGs3EYjfWI9bZ3juyNtOfZiA/https%3A%2F%2Fipmsa-loris.bic.mni.mcgill.ca%2Fstatistics%2F" target="_blank" class="">https://ipmsa-loris.bic.mni.mcgill.ca/statistics/</a></span></div>
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo" class="">
<span style="font-variant-ligatures:no-common-ligatures" class="">[Wed Jan 06 12:26:24.730944 2021] [php7:notice] [pid 25824] [client<span class=""> </span><a href="http://secure-web.cisco.com/194rpS3q9XNXxClvnkwJk3Z5TXDYQpXdnJTmjmtMl0rW6vlUQEBQ8jnizUEJXqsPLQZcrPYqfCmX2WJTnp3nbXr5cVnEgCU8VA2JkoAWYhp3kgMry9HCaKnqYtfk4JpPMefzKgVd51jBzXzOCuvJIFpJYxFjIcZKtr3exwshNEd_qp-CKLKgW6jrpJOdMJ1oi5p0T_OtI91aMZo_Jz2piFL5ozxblRcq0dwB8GHVUChwyf71wqsVzCO7DtSOwr8oum5QXdnAvSQRVRl8WFapVmg/http%3A%2F%2F216.15.126.108%3A56738" target="_blank" class="">216.15.126.108:56738</a>]
PHP Notice: Undefined index: Male in /var/www/loris/modules/statistics/php/stats_demographic.class.inc on line 133, referer:<span class=""> </span><a href="https://secure-web.cisco.com/1aW5ReU5kAMfdryzMa60cZ7x3ix4DOm9RDXsWQ9OW63HzvgMvrO8HyVV3oMaPfYYwVqN6aeUrpnadfu93Z3s3G-LudGQUVVKEbi6NBbvaxNUzXFvgvnp3SSSeHMd5qZhvpFr2JV8Ve9jZDAP0rFkfXoPUT6SVoZ8xWd0Gsnxf1ADisP3ucBGZlwIpFb3lDNuEYdn2D48-jDWyMKRxSCPbuOlWgbyVYZ2xMsedRJPsi1OlNoNqBoR1Oy67jnvcSROGs3EYjfWI9bZ3juyNtOfZiA/https%3A%2F%2Fipmsa-loris.bic.mni.mcgill.ca%2Fstatistics%2F" target="_blank" class="">https://ipmsa-loris.bic.mni.mcgill.ca/statistics/</a></span></div>
</div>
<div class="">===</div>
<div class=""><br class="">
</div>
</div>
</blockquote>
<div class=""><br class="">
</div>
<div class="">What version of LORIS is this? I think the notices are unrelated and probably harmless but should still be fixed if they haven't been yet.</div>
<div class=""><br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div class="">
<div class=""></div>
<div class=""><br class="">
</div>
<div class="">4. I am not able to visualiza any image. A message “LOADING …” appears but nothing happens. </div>
<div class="">Looking at the loris-error.log I can see that the path to the images is missing a ‘/‘</div>
<div class=""><br class="">
</div>
<div class="">===</div>
<div class="">
<div style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo" class="">
<span style="font-variant-ligatures:no-common-ligatures" class="">PHP Warning: readfile(/data_/ipmsa/loris_data/IPMSA/<span style="background-color:rgb(255,0,0)" class="">dataassembly</span>/343633/baseline/mri/native/IPMSA_343633_baseline_flair_001.mnc):
failed to open stream: No such file or directory in /var/www/loris/modules/brainbrowser/ajax/image.php on line 56, referer:<span class=""> </span><a href="https://secure-web.cisco.com/1qcnAyuV-itGYLsW-bvfnnZmMXgviJ0bIS9ewUeKT7Z2LHVxmN8AAU4UInV2oAgZB6NrfGeuQY9xvXYra4_NtFqwgjqKJCIX6ppgg2uhZuVWYnAS95VZLN5cW8-aU6C-xULojAnf3IticPcrom9I3-N4KMODp1Q9-weJyX26EQxaHXpoCXh9X9EcFZM_TM55umfEaItv8nQkF2DSbxHEuPylNfr__PRXLNppDHcJz2Bx1w5JBNctLW55U7asBDcXV1wJQuUeyyqWUIS4RbH7_tQ/https%3A%2F%2Fipmsa-loris.bic.mni.mcgill.ca%2Fbrainbrowser%2F%3Fminc_id%3D%5B112603" target="_blank" class="">https://ipmsa-loris.bic.mni.mcgill.ca/brainbrowser/?minc_id=[112603</a>]</span></div>
</div>
<div class=""><span class="">===</span></div>
<div class=""><span class=""><br class="">
</span></div>
<div class=""><font class="">Do you know where can this missing ‘/‘ should be set?</font></div>
<div class=""><br class="">
</div>
</div>
</blockquote>
<div class=""><br class="">
</div>
<div class="">It looks like that code is using the imagePath configuration variable which should have a trailing /. It should be the configuration option labeled "Path to images for display in Imaging Browser (e.g. /data/$project/data/)" in the Configuration
module frontend.</div>
<div class=""><br class="">
</div>
</div>
<div class="gmail_quote">- Dave<br class="">
</div>
</div>
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<div class="">The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine
at <a href="http://secure-web.cisco.com/1Bn-A6BNQYmoHoh0aKKMSWBfQTrlBr0BWS1FZeKQLMr7b9a4MR40eb7o1GYF3RezeIjeL7yzvdwBVo-y5KprixnnicfIZ2uRMcYpJdEZj7pXn_BcA2nvjxjqCqItGIci48d3SiVxmK600XfRZeNQAhx_3zqRSe9EbTaf1-3Q44fjDHWioqUQ3rbShpXQ0OuXCYz0MKY6JR2ujH2JAL9G6_zCVp7-I9bfa5DBHrR8Z34Dm_s2zhQ6-xrPW0OSZDjFBoLDnEKb8ADuqqjBcSfNhqw/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline" target="_blank" class="">
http://www.massgeneralbrigham.org/complianceline</a> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.</div>
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<div>The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.</div></body>
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