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<div class="">Dear LorisDev team,</div>
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<div class="">We are experiencing the following issues in Loris. Could you please help me or guide me on how address them.</div>
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<div class="">1. After login into LORIS, the webpage does not allow the user to go to any link until the graph under "Study Progression" is created. This is taking more than one minute to load. I guess this is because we have hundreds of centers. Is it possible
to remove the graph from the landing page? (See attachment)</div>
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<div class="">2. When using the Data Query Tool the front-end crashes with error 500.</div>
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<div class="">This is what I can see in the loris-error.log</div>
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<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures; background-color: rgb(19, 150, 163);" class="">[</span><span style="font-variant-ligatures: no-common-ligatures;" class="">Wed Jan 06 12:23:31.920274 2021</span><span style="font-variant-ligatures: no-common-ligatures; background-color: rgb(19, 150, 163);" class="">]</span><span style="font-variant-ligatures: no-common-ligatures;" class=""> [php7:error]
[pid 12100] [client 216.15.126.108:56023] PHP Fatal error: Uncaught ConfigurationException: NDB_Factory::CouchDB() requires all parameters to be supplied. in /var/www/loris/php/libraries/NDB_Factory.class.inc:297\nStack trace:\n#0 /var/www/loris/modules/dataquery/php/dataquery.class.inc(59):
NDB_Factory->couchDB('%COUCH_DATABASE...', '%COUCH_HOSTNAME...', 0, '%COUCH_USERNAME...', '%COUCH_PASSWORD...')\n#1 /var/www/loris/php/libraries/NDB_Form.class.inc(188): LORIS\\dataquery\\Dataquery->setup()\n#2 /var/www/loris/src/Middleware/UserPageDecorationMiddleware.php(171):
NDB_Form->handle(Object(Zend\\Diactoros\\ServerRequest))\n#3 /var/www/loris/src/Middleware/PageDecorationMiddleware.php(49): LORIS\\Middleware\\UserPageDecorationMiddleware->process(Object(Zend\\Diactoros\\ServerRequest), Object(LORIS\\dataquery\\Dataquery))\n#4
/var/www/loris/php/libraries/NDB_Page.class.inc(659): LORIS\\Middleware\\PageDecorationMiddleware->process(Object(Zend\\Diactoros\\ServerRequest), Object(LORIS\\dataquery\\Dataquery))\n#5 /var/www/loris/php/libraries/Module.class.inc(341): NDB_Page->process(Object(Zend\\
in /var/www/loris/php/libraries/NDB_Factory.class.inc on line 297, referer: <a href="https://ipmsa-loris.bic.mni.mcgill.ca/imaging_browser/viewSession/?sessionID=85935" class="">
https://ipmsa-loris.bic.mni.mcgill.ca/imaging_browser/viewSession/?sessionID=85935</a></span></div>
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<div class="">3. In the statistics section (Reports -> Statistics) I can see the following message at the bottom of the page:</div>
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<h2 style="box-sizing: border-box; margin-bottom: 10px; font-weight: 500; margin-top: 20px; color: rgb(51, 51, 51); font-size: 30px; font-family: "Helvetica Neue", Helvetica, Arial, sans-serif; line-height: 1.1; font-variant-ligatures: normal; orphans: 2; widows: 2; background-color: rgb(255, 255, 255); text-decoration-thickness: initial;" class="">
Oops</h2>
<p style="box-sizing: border-box; margin: 0px 0px 10px; color: rgb(51, 51, 51); font-family: "Helvetica Neue", Helvetica, Arial, sans-serif; font-size: 14px; font-variant-ligatures: normal; orphans: 2; widows: 2; background-color: rgb(255, 255, 255); text-decoration-thickness: initial;" class="">
It seems like the scan type selected does not have a corresponding column in the mri_parameter_form table in the database.<br style="box-sizing: border-box;" class="">
In order to display the statistics for the scan type, make sure the mri_parameter_form table contains a column in the exact format SCANTYPE_Scan_done</p>
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<div class="">In the loris-error.log a see a large list of the following messages:</div>
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<div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(0, 0, 0);" class="">
<span style="font-variant-ligatures: no-common-ligatures" class="">[Wed Jan 06 12:26:24.730900 2021] [php7:notice] [pid 25824] [client 216.15.126.108:56738] PHP Notice: Undefined index: Female in /var/www/loris/modules/statistics/php/stats_demographic.class.inc
on line 137, referer: <a href="https://ipmsa-loris.bic.mni.mcgill.ca/statistics/" class="">
https://ipmsa-loris.bic.mni.mcgill.ca/statistics/</a></span></div>
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<span style="font-variant-ligatures: no-common-ligatures" class="">[Wed Jan 06 12:26:24.730935 2021] [php7:notice] [pid 25824] [client 216.15.126.108:56738] PHP Notice: Undefined index: OLYMPUS_CLINICAL_SCREENING in /var/www/loris/modules/statistics/php/stats_demographic.class.inc
on line 133, referer: <a href="https://ipmsa-loris.bic.mni.mcgill.ca/statistics/" class="">
https://ipmsa-loris.bic.mni.mcgill.ca/statistics/</a></span></div>
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<span style="font-variant-ligatures: no-common-ligatures" class="">[Wed Jan 06 12:26:24.730944 2021] [php7:notice] [pid 25824] [client 216.15.126.108:56738] PHP Notice: Undefined index: Male in /var/www/loris/modules/statistics/php/stats_demographic.class.inc
on line 133, referer: <a href="https://ipmsa-loris.bic.mni.mcgill.ca/statistics/" class="">
https://ipmsa-loris.bic.mni.mcgill.ca/statistics/</a></span></div>
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<div class="">4. I am not able to visualiza any image. A message “LOADING …” appears but nothing happens. </div>
<div class="">Looking at the loris-error.log I can see that the path to the images is missing a ‘/‘</div>
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<span style="font-variant-ligatures: no-common-ligatures" class="">PHP Warning: readfile(/data_/ipmsa/loris_data/IPMSA/<span style="background-color: rgb(255, 0, 0);" class="">dataassembly</span>/343633/baseline/mri/native/IPMSA_343633_baseline_flair_001.mnc):
failed to open stream: No such file or directory in /var/www/loris/modules/brainbrowser/ajax/image.php on line 56, referer:
<a href="https://ipmsa-loris.bic.mni.mcgill.ca/brainbrowser/?minc_id=[112603" class="">
https://ipmsa-loris.bic.mni.mcgill.ca/brainbrowser/?minc_id=[112603</a>]</span></div>
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<div class=""><font color="#000000" class="">Do you know where can this missing ‘/‘ should be set?</font></div>
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<div class="">Thank you in advance for your help.</div>
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<div class="">Best regards,</div>
<div class="">Alfredo.</div>
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<div class=""><img apple-inline="yes" id="EF12516D-CF82-4B0A-9526-2D145759333E" src="cid:385AE0BA-DCBF-4FFF-985B-4DD28B51BCFD" class=""></div>
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