<div dir="ltr">Hi Ioannis,<div><br></div><div>No worries, we're here to help!</div><div><br></div><div>On Unix systems, all users usually have permission to create directories in <font face="monospace">/tmp</font> but just to be sure it'd be good idea to test that: just try</div><div><br></div><div><font face="monospace">% mkdir /tmp/hello</font></div><div><font face="monospace"><br></font></div><div><font face="arial, sans-serif">and see if that works. If it does, then it means there's something more "sneaky" going on.</font></div><div><font face="arial, sans-serif"><br></font></div><div><font face="arial, sans-serif">You can try specifying an alternate temporary directory in which the upload script will write files: just type the following line in your </font><font face="monospace">environment</font><font face="arial, sans-serif"> file (located in the LORIS-MRI root directory):</font></div><div><font face="arial, sans-serif"><br></font></div><div>





<p class="gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)"><span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures">export TMPDIR=/my/alternate/temporary/dir</span></p><p class="gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)"><span class="gmail-s1" style="font-variant-ligatures:no-common-ligatures"><br></span></p><p class="gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)"><br></p><p class="gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;line-height:normal;color:rgb(0,0,0)"><font face="arial, sans-serif">Let me know if that helps.</font></p><p class="gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;line-height:normal;color:rgb(0,0,0)"><font face="arial, sans-serif"><br></font></p><p class="gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;line-height:normal;color:rgb(0,0,0)"><font face="arial, sans-serif"><br></font></p><p class="gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;line-height:normal;color:rgb(0,0,0)"><font face="arial, sans-serif">Cheers,</font></p><p class="gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;line-height:normal;color:rgb(0,0,0)"><font face="arial, sans-serif">Nicolas</font></p><p class="gmail-p1" style="margin:0px;font-variant-numeric:normal;font-variant-east-asian:normal;font-stretch:normal;line-height:normal;color:rgb(0,0,0)"><font face="arial, sans-serif"><br></font></p></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Sep 15, 2020 at 4:23 PM Ioannis Pappas <<a href="mailto:ioannis@berkeley.edu">ioannis@berkeley.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div style="overflow-wrap: break-word;"><div>Hi Loris support.</div><div><br></div><div>Another quick question (hopefully I don’t occupy a lot of your time during this pandemic).</div><div><br></div><div>I am running the simple imaging upload pearl script like this:</div><div><br></div><div><i>sudo -i -u lorisadmin /data/loris-mri/bin/mri/uploadNeuroDB/<a href="http://imaging_upload_file.pl" target="_blank">imaging_upload_file.pl</a> -profile prod -upload_id 2 /data/loris/incoming/BR013_243782_V1.zip -verbose</i></div><div><br></div><div>I think the script involves creating some directories because it leads to an error. The error is this:</div><div><br></div><div><i>mkdir /tmp/ImagingUpload-13-7-7Z_JFF/BR013_243782_V1/BIAS_12ch_22: Permission denied at /usr/local/share/perl5/Archive/Zip/DirectoryMember.pm </i></div><div><br></div><div>Do you guys think it has to do with my permission at /tmp or there is something else more sneaky? The /tmp folder doesn’t seem to have anything related to <i>ImagingUpload</i>[..]</div><div><br></div><div>Thank you very much. Hopefully I don’t see more errors in the script.</div><div><br></div><div>Best wishes,</div><div>Ioannis</div></div>_______________________________________________<br>
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