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Hi Cécile,
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<div class="">Thank you for your prompt response. We will make the changes, try again, and report back to this thread.</div>
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<div class="">Best regards,</div>
<div class="">Alfredo.<br class="">
<div><br class="">
<blockquote type="cite" class="">
<div class="">On Nov 25, 2019, at 10:06 AM, Cecile Madjar <<a href="mailto:cecile.madjar@mcin.ca" class="">cecile.madjar@mcin.ca</a>> wrote:</div>
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<p class=""><span style="padding: 3px 10px; border-radius: 5px; color: #ffffff; font-weight: bold; display: inline-block; background-color: #ff0000;" class=""> External Email - Use Caution </span></p>
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<div dir="ltr" class="">Hi Alfredo,
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<div class="">Indeed, the StudyInstanceUID needs to have a value for the insertion pipeline to work so that could explain the no DICOM found error. </div>
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<div class="">FYI - StudyInstanceUID also needs to be unique for each uploaded study otherwise insertion in the tarchive tables would fail with the error: "the study has already been uploaded"</div>
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<div class="">Hope this helps,</div>
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<div class="">Cécile</div>
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<div dir="ltr" class="gmail_attr">On Mon, Nov 25, 2019 at 10:02 AM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu" class="">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br class="">
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<div class="">Dear LorisDev team,</div>
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</div>
<div class="">I am batch uploading images to imaging visits using the script batch_uploads_imageuploader but for some images I get the following error:</div>
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<div class=""><b class="">The target directory does not contain a single DICOM file.</b></div>
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<div class="">I had seen this error previously due to missing dicom fields like StudyID (0020,0010) and ImagePositionPatient (0020,0032). However, after checking these particular dicom fields and setting StudyID it to '0' I am still getting the same error.
What other dicom fields should I check?</div>
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<div class="">Is there a log where I can exactly find the error? Does the "StudyInstanceUID" need to have a value?</div>
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<div class="">I'm pasting the dcmdump of a dicom at the end of this email in case this might help figuring out what is the issue.</div>
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<div class="">I am using LORIS <a href="mailto:v@20.1.1." target="_blank" class="">
v@20.1.1.</a></div>
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<div class="">Thank you in advance for your help.</div>
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</div>
<div class="">Best regards,</div>
<div class="">Alfredo.</div>
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</div>
<div class="">--------------------------------------------------------------------------------------</div>
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<div class=""># Dicom-File-Format</div>
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</div>
<div class=""># Dicom-Meta-Information-Header</div>
<div class=""># Used TransferSyntax: Little Endian Explicit</div>
<div class="">(0002,0000) UL 230 # 4, 1 FileMetaInformationGroupLength</div>
<div class="">(0002,0001) OB 00\01 # 2, 1 FileMetaInformationVersion</div>
<div class="">(0002,0002) UI =MRImageStorage # 26, 1 MediaStorageSOPClassUID</div>
<div class="">(0002,0003) UI [1.2.826.0.1.3680043.2.1125.1.62497394598874749597838823223385071] # 64, 1 MediaStorageSOPInstanceUID</div>
<div class="">(0002,0010) UI =LittleEndianImplicit # 18, 1 TransferSyntaxUID</div>
<div class="">(0002,0012) UI [1.2.276.0.7230010.3.0.3.6.0] # 28, 1 ImplementationClassUID</div>
<div class="">(0002,0013) SH [OFFIS_DCMTK_360] # 16, 1 ImplementationVersionName</div>
<div class="">(0002,0016) AE [GDCM/ITK 3.17.0] # 16, 1 SourceApplicationEntityTitle</div>
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</div>
<div class=""># Dicom-Data-Set</div>
<div class=""># Used TransferSyntax: Little Endian Implicit</div>
<div class="">(0008,0008) CS [DERIVED\SECONDARY] # 18, 2 ImageType</div>
<div class="">(0008,0016) UI =MRImageStorage # 26, 1 SOPClassUID</div>
<div class="">(0008,0018) UI [1.2.826.0.1.3680043.2.1125.1.62497394598874749597838823223385071] # 64, 1 SOPInstanceUID</div>
<div class="">(0008,0020) DA [20000101] # 8, 1 StudyDate</div>
<div class="">(0008,0021) DA [20000101] # 8, 1 SeriesDate</div>
<div class="">(0008,0022) DA [20000101] # 8, 1 AcquisitionDate</div>
<div class="">(0008,0030) TM (no value available) # 0, 0 StudyTime</div>
<div class="">(0008,0031) TM [085517] # 6, 1 SeriesTime</div>
<div class="">(0008,0032) TM [085517] # 6, 1 AcquisitionTime</div>
<div class="">(0008,0060) CS [MR] # 2, 1 Modality</div>
<div class="">(0008,0070) LO [AAABBBCCC] # 6, 1 Manufacturer</div>
<div class="">(0008,0104) LO [Anonymized] # 10, 1 CodeMeaning</div>
<div class="">(0008,103e) LO [t1c] # 4, 1 SeriesDescription</div>
<div class="">(0008,1090) LO [nifti2dicom] # 12, 1 ManufacturerModelName</div>
<div class="">(0010,0010) PN [10041] # 6, 1 PatientName</div>
<div class="">(0010,0020) LO [10041] # 6, 1 PatientID</div>
<div class="">(0010,0021) LO [Anonymized] # 10, 1 IssuerOfPatientID</div>
<div class="">(0010,0030) DA [19650101] # 8, 1 PatientBirthDate</div>
<div class="">(0010,0040) CS [Anonymized] # 10, 1 PatientSex</div>
<div class="">(0010,1010) AS [Anonymized] # 10, 1 PatientAge</div>
<div class="">(0010,1030) DS (no value available) # 0, 0 PatientWeight</div>
<div class="">(0010,2150) LO [Anonymized] # 10, 1 CountryOfResidence</div>
<div class="">(0010,2152) LO [Anonymized] # 10, 1 RegionOfResidence</div>
<div class="">(0010,21f0) LO [Anonymized] # 10, 1 PatientReligiousPreference</div>
<div class="">(0012,0050) LO [baseline] # 8, 1 ClinicalTrialTimePointID</div>
<div class="">(0012,0062) CS [Yes] # 4, 1 PatientIdentityRemoved</div>
<div class="">(0012,0063) LO [Genentech] # 10, 1 DeidentificationMethod</div>
<div class="">(0018,0050) DS [3] # 2, 1 SliceThickness</div>
<div class="">(0018,0088) DS [3] # 2, 1 SpacingBetweenSlices</div>
<div class="">(0020,000d) UI (no value available) # 0, 0 StudyInstanceUID</div>
<div class="">(0020,000e) UI [1.2.826.0.1.3680043.2.1143.2737712182581015462892759360372011946] # 64, 1 SeriesInstanceUID</div>
<div class=""><b class="">(0020,0010) SH [0] # 2, 1 StudyID</b></div>
<div class="">(0020,0011) IS [901] # 4, 1 SeriesNumber</div>
<div class="">(0020,0012) IS [1] # 2, 1 AcquisitionNumber</div>
<div class="">(0020,0013) IS [1] # 2, 1 InstanceNumber</div>
<div class="">(0020,0020) CS [L\R] # 4, 2 PatientOrientation</div>
<div class="">(0020,0032) DS [-116.48152160645\-118.93698120117\-275.82513427734] # 50, 3 ImagePositionPatient</div>
<div class="">(0020,0037) DS [1\0\0\0\1\0] # 12, 6 ImageOrientationPatient</div>
<div class="">(0020,0052) UI [1.2.826.0.1.3680043.2.1143.263896814292546686535778822643473818] # 64, 1 FrameOfReferenceUID</div>
<div class="">(0028,0002) US 1 # 2, 1 SamplesPerPixel</div>
<div class="">(0028,0004) CS [MONOCHROME2] # 12, 1 PhotometricInterpretation</div>
<div class="">(0028,0010) US 256 # 2, 1 Rows</div>
<div class="">(0028,0011) US 256 # 2, 1 Columns</div>
<div class="">(0028,0030) DS [1\1] # 4, 2 PixelSpacing</div>
<div class="">(0028,0100) US 16 # 2, 1 BitsAllocated</div>
<div class="">(0028,0101) US 16 # 2, 1 BitsStored</div>
<div class="">(0028,0102) US 15 # 2, 1 HighBit</div>
<div class="">(0028,0103) US 1 # 2, 1 PixelRepresentation</div>
<div class="">(0032,1033) LO [Anonymized] # 10, 1 RequestingService</div>
<div class="">(0040,0280) ST [Anonymized] # 10, 1 CommentsOnThePerformedProcedureStep</div>
<div class="">(0400,0563) LO [Anonymized] # 10, 1 ModifyingSystem</div>
<div class="">(0400,0564) LO [Anonymized] # 10, 1 SourceOfPreviousValues</div>
<div class="">(0400,0565) CS [Anonymized] # 10, 1 ReasonForTheAttributeModification</div>
<div class="">(1110,21b0) ?? 0a\00 # 2, 1 Unknown Tag & Data</div>
<div class="">(7fe0,0010) OW 0000\0000\0000\0000\0000\0000\0000\0000\0000\0000\0000\0000\0000... # 131072, 1 PixelData</div>
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