From molano at ext.cnio.es  Mon May  8 06:43:48 2023
From: molano at ext.cnio.es (=?iso-8859-1?Q?Olano=2EMar=EDa?=)
Date: Mon, 8 May 2023 10:43:48 +0000
Subject: [Loris-dev] VISIT LABEL
Message-ID: <PAWPR02MB91284E425794C7C2CCA8281880719@PAWPR02MB9128.eurprd02.prod.outlook.com>

Good morning!

Our team is in the process of implementing visits to our subproject ID =3 and we would like the visits to be predetermined sentences instead of VX. We changed the config.xml file as so:

        <visitLabel subprojectID="3">
            <!-- generation can have either 'user' or 'sequence' to denote user entered or a pre-defined sequence -->
            <generation>sequence</generation>
            <regex>/^[A-Z0-9]{20}$/i</regex>
            <length>20</length>
            <suggest>%value%</suggest> <!-- %value% will be substituted for the next unique number -->
            <labelSet>
                <item value="ClinicalPancreas">Clinical Information from PDAC patients</item>
                <item value="ImagingPancreas">Pathological images from PDAC patients</item>
            </labelSet>
        </visitLabel>

And the Visit_Window table in MySQL has been properly filled out as follows.

[cid:image003.jpg at 01D981AA.BB42C940]

However, when trying to create a timepoint for a patient in this subproject, an error pops up:
[cid:image004.jpg at 01D981AA.BB42C940]
These are obviously both linked as we have been able to create  a patient in both CASADP project and Pancreas subproject. We suspect the problem falls on our edited config.xml.

If you could help us shed some light on this problem, we would be more than thankful.

Mar?a







[Hazte Amigo del CNIO. M?s investigaci?n, menos c?ncer] <https://www.cnio.es/es/colaborar/comocolaborar.asp>

Fb Amigos del CNIO<https://www.facebook.com/AmigosdelCNIO/> |  Tw @CNIOStopCancer<https://twitter.com/CNIOStopCancer> |  Youtube canalcnio<https://www.youtube.com/canalcnio>


**ADVERTENCIA LEGAL**: Este correo electr?nico, y en su caso los ficheros adjuntos, pueden contener informaci?n protegida para el uso exclusivo de su destinatario. Se proh?be la distribuci?n, reproducci?n o cualquier otro tipo de transmisi?n por parte de otra persona que no sea el destinatario. Si usted recibe por error este correo, se ruega comunicarlo al remitente y borrar el mensaje recibido.
De conformidad con lo dispuesto en el Reglamento (UE) 2016/679 relativo a la protecci?n de los datos personales de las personas f?sicas, la informaci?n personal que nos pueda facilitar a trav?s de este correo electr?nico quedar? registrada por la Fundaci?n CNIO con la finalidad de tramitar el objeto del presente correo electr?nico. El tratamiento de sus datos personales se encuentra legitimado por ser necesario para gestionar el objeto del presente mensaje. Estos datos personales no ser?n comunicados a ning?n destinatario salvo a aquellos que usted nos autorice o as? venga exigido por una ley. Ud. podr? ejercer los derechos de acceso, rectificaci?n, supresi?n, limitaci?n de tratamiento, portabilidad y oposici?n en la siguiente direcci?n: c/Melchor Fernandez Almagro 3, 28029 (Madrid). Podr? ponerse en contacto con el Delegado de Protecci?n de Datos en: delegado_lopd at cnio.es. Para el caso de que Ud. precise conocer informaci?n adicional sobre el tratamiento de sus datos personales, puede consultar dicha informaci?n adicional en el siguiente enlace dentro de nuestra p?gina web: https://www.cnio.es/es/privacidad/index.asp

**LEGAL NOTICE**: This email and any attached files may contain protected information for the sole use of its intended recipient or addressee. Anyone other than the intended recipient or addressee is strictly prohibited from distributing, reproducing or transmitting the email and its contents in any way. If you receive this email in error, please notify the sender and delete the message.
Pursuant to the provisions of EU Regulation 2016/679 regarding the protection of personal data, any personal information you provide through this email will be registered by the CNIO Foundation in order to deal with content of this email. Your personal data must be processed in order to be able to deal with the content and purpose of this message. Your personal details will not be passed on to anyone else unless you authorise us to do so or we are required to do so by law. You may exercise your rights regarding access, rectification, suppression, limitation of processing, portability and opposition by writing to the following address: c/Melchor Fernandez Almagro 3, 28029 (Madrid). You may contact the Data Protection Delegate (Delegado de Protecci?n de Datos) at: delegado_lopd at cnio.es. If you require further information about the processing of your personal data, go to the following link on our webpage: https://www.cnio.es/es/privacidad/index.asp
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From molano at ext.cnio.es  Thu May 11 06:07:52 2023
From: molano at ext.cnio.es (=?iso-8859-1?Q?Olano=2EMar=EDa?=)
Date: Thu, 11 May 2023 10:07:52 +0000
Subject: [Loris-dev] not able to log in
Message-ID: <PAWPR02MB912881B76DE0BD8D71B352D580749@PAWPR02MB9128.eurprd02.prod.outlook.com>

Good morning!

I am afraid to report this morning has come with difficulties, as LORIS suddenly stopped letting us log in as it should, we entered our username and password as normal, it did let us log in and after a while it did tell us we didn't have access to this page and to go to the main page to log in yet again. This is normal if you let LORIS sit for a bit, so we went to the main page, logged in, and it doesn't let us into LORIS. It also doesn't say we have entered the wrong password or username (as we haven't done so), it just stays on the main page as if nothing happened.

This problem arose once before, when downloading LORIS MRI, as we installed it in the LORIS folders itself and it must have been confused. However, after changing it, it worked as well as before. This morning error happened after I was checking the various mri tables through the MySQL console, so my presumption is that LORIS MRI must have triggered this error yet again, unfortunately, we do not know how to solve it this time and we worry this might happen in the future.
If you could help us shed some light on this problem, we would be more than thankful.
Mar?a





[Hazte Amigo del CNIO. M?s investigaci?n, menos c?ncer] <https://www.cnio.es/es/colaborar/comocolaborar.asp>

Fb Amigos del CNIO<https://www.facebook.com/AmigosdelCNIO/> |  Tw @CNIOStopCancer<https://twitter.com/CNIOStopCancer> |  Youtube canalcnio<https://www.youtube.com/canalcnio>


**ADVERTENCIA LEGAL**: Este correo electr?nico, y en su caso los ficheros adjuntos, pueden contener informaci?n protegida para el uso exclusivo de su destinatario. Se proh?be la distribuci?n, reproducci?n o cualquier otro tipo de transmisi?n por parte de otra persona que no sea el destinatario. Si usted recibe por error este correo, se ruega comunicarlo al remitente y borrar el mensaje recibido.
De conformidad con lo dispuesto en el Reglamento (UE) 2016/679 relativo a la protecci?n de los datos personales de las personas f?sicas, la informaci?n personal que nos pueda facilitar a trav?s de este correo electr?nico quedar? registrada por la Fundaci?n CNIO con la finalidad de tramitar el objeto del presente correo electr?nico. El tratamiento de sus datos personales se encuentra legitimado por ser necesario para gestionar el objeto del presente mensaje. Estos datos personales no ser?n comunicados a ning?n destinatario salvo a aquellos que usted nos autorice o as? venga exigido por una ley. Ud. podr? ejercer los derechos de acceso, rectificaci?n, supresi?n, limitaci?n de tratamiento, portabilidad y oposici?n en la siguiente direcci?n: c/Melchor Fernandez Almagro 3, 28029 (Madrid). Podr? ponerse en contacto con el Delegado de Protecci?n de Datos en: delegado_lopd at cnio.es. Para el caso de que Ud. precise conocer informaci?n adicional sobre el tratamiento de sus datos personales, puede consultar dicha informaci?n adicional en el siguiente enlace dentro de nuestra p?gina web: https://www.cnio.es/es/privacidad/index.asp

**LEGAL NOTICE**: This email and any attached files may contain protected information for the sole use of its intended recipient or addressee. Anyone other than the intended recipient or addressee is strictly prohibited from distributing, reproducing or transmitting the email and its contents in any way. If you receive this email in error, please notify the sender and delete the message.
Pursuant to the provisions of EU Regulation 2016/679 regarding the protection of personal data, any personal information you provide through this email will be registered by the CNIO Foundation in order to deal with content of this email. Your personal data must be processed in order to be able to deal with the content and purpose of this message. Your personal details will not be passed on to anyone else unless you authorise us to do so or we are required to do so by law. You may exercise your rights regarding access, rectification, suppression, limitation of processing, portability and opposition by writing to the following address: c/Melchor Fernandez Almagro 3, 28029 (Madrid). You may contact the Data Protection Delegate (Delegado de Protecci?n de Datos) at: delegado_lopd at cnio.es. If you require further information about the processing of your personal data, go to the following link on our webpage: https://www.cnio.es/es/privacidad/index.asp
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From xavier.lecoursboucher at mcgill.ca  Thu May 11 09:48:06 2023
From: xavier.lecoursboucher at mcgill.ca (Xavier Lecours Boucher, Mr)
Date: Thu, 11 May 2023 13:48:06 +0000
Subject: [Loris-dev] not able to log in
In-Reply-To: <PAWPR02MB912881B76DE0BD8D71B352D580749@PAWPR02MB9128.eurprd02.prod.outlook.com>
References: <PAWPR02MB912881B76DE0BD8D71B352D580749@PAWPR02MB9128.eurprd02.prod.outlook.com>
Message-ID: <QB1PR01MB235633792736A2DF06379014FC749@QB1PR01MB2356.CANPRD01.PROD.OUTLOOK.COM>

Good morning Maria,

Thank you for reporting this issue. To help us find the problem, we would need some information from you crowser and from the server's error log. Are you able to provide your browser's console log, http request response from the network tab and/or your server's error log if any.

Thank you,

 - Xavier


________________________________
From: loris-dev-bounces at bic.mni.mcgill.ca <loris-dev-bounces at bic.mni.mcgill.ca> on behalf of Olano.Mar?a <molano at ext.cnio.es>
Sent: May 11, 2023 5:07 AM
To: loris-dev at bic.mni.mcgill.ca <loris-dev at bic.mni.mcgill.ca>
Subject: [Loris-dev] not able to log in

Some people who received this message don't often get email from molano at ext.cnio.es. Learn why this is important<https://aka.ms/LearnAboutSenderIdentification>

Good morning!



I am afraid to report this morning has come with difficulties, as LORIS suddenly stopped letting us log in as it should, we entered our username and password as normal, it did let us log in and after a while it did tell us we didn?t have access to this page and to go to the main page to log in yet again. This is normal if you let LORIS sit for a bit, so we went to the main page, logged in, and it doesn?t let us into LORIS. It also doesn?t say we have entered the wrong password or username (as we haven?t done so), it just stays on the main page as if nothing happened.



This problem arose once before, when downloading LORIS MRI, as we installed it in the LORIS folders itself and it must have been confused. However, after changing it, it worked as well as before. This morning error happened after I was checking the various mri tables through the MySQL console, so my presumption is that LORIS MRI must have triggered this error yet again, unfortunately, we do not know how to solve it this time and we worry this might happen in the future.

If you could help us shed some light on this problem, we would be more than thankful.

Mar?a






[Hazte Amigo del CNIO. M?s investigaci?n, menos c?ncer] <https://www.cnio.es/es/colaborar/comocolaborar.asp>

Fb Amigos del CNIO<https://www.facebook.com/AmigosdelCNIO/> |  Tw @CNIOStopCancer<https://twitter.com/CNIOStopCancer> |  Youtube canalcnio<https://www.youtube.com/canalcnio>


**ADVERTENCIA LEGAL**: Este correo electr?nico, y en su caso los ficheros adjuntos, pueden contener informaci?n protegida para el uso exclusivo de su destinatario. Se proh?be la distribuci?n, reproducci?n o cualquier otro tipo de transmisi?n por parte de otra persona que no sea el destinatario. Si usted recibe por error este correo, se ruega comunicarlo al remitente y borrar el mensaje recibido.
De conformidad con lo dispuesto en el Reglamento (UE) 2016/679 relativo a la protecci?n de los datos personales de las personas f?sicas, la informaci?n personal que nos pueda facilitar a trav?s de este correo electr?nico quedar? registrada por la Fundaci?n CNIO con la finalidad de tramitar el objeto del presente correo electr?nico. El tratamiento de sus datos personales se encuentra legitimado por ser necesario para gestionar el objeto del presente mensaje. Estos datos personales no ser?n comunicados a ning?n destinatario salvo a aquellos que usted nos autorice o as? venga exigido por una ley. Ud. podr? ejercer los derechos de acceso, rectificaci?n, supresi?n, limitaci?n de tratamiento, portabilidad y oposici?n en la siguiente direcci?n: c/Melchor Fernandez Almagro 3, 28029 (Madrid). Podr? ponerse en contacto con el Delegado de Protecci?n de Datos en: delegado_lopd at cnio.es. Para el caso de que Ud. precise conocer informaci?n adicional sobre el tratamiento de sus datos personales, puede consultar dicha informaci?n adicional en el siguiente enlace dentro de nuestra p?gina web: https://www.cnio.es/es/privacidad/index.asp

**LEGAL NOTICE**: This email and any attached files may contain protected information for the sole use of its intended recipient or addressee. Anyone other than the intended recipient or addressee is strictly prohibited from distributing, reproducing or transmitting the email and its contents in any way. If you receive this email in error, please notify the sender and delete the message.
Pursuant to the provisions of EU Regulation 2016/679 regarding the protection of personal data, any personal information you provide through this email will be registered by the CNIO Foundation in order to deal with content of this email. Your personal data must be processed in order to be able to deal with the content and purpose of this message. Your personal details will not be passed on to anyone else unless you authorise us to do so or we are required to do so by law. You may exercise your rights regarding access, rectification, suppression, limitation of processing, portability and opposition by writing to the following address: c/Melchor Fernandez Almagro 3, 28029 (Madrid). You may contact the Data Protection Delegate (Delegado de Protecci?n de Datos) at: delegado_lopd at cnio.es. If you require further information about the processing of your personal data, go to the following link on our webpage: https://www.cnio.es/es/privacidad/index.asp
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From rogers at bic.mni.mcgill.ca  Thu May 11 13:02:02 2023
From: rogers at bic.mni.mcgill.ca (Christine Rogers)
Date: Thu, 11 May 2023 13:02:02 -0400
Subject: [Loris-dev] VISIT LABEL
In-Reply-To: <PAWPR02MB9128FBAAD017D6CA7B3AC1AD80779@PAWPR02MB9128.eurprd02.prod.outlook.com>
References: <PAWPR02MB91284E425794C7C2CCA8281880719@PAWPR02MB9128.eurprd02.prod.outlook.com>
 <CALbt7NAtam=117OTN75Cc0G0AopD6O4iWc-S5u64=j-LJ6PHWg@mail.gmail.com>
 <CAOSJeaK=iBYxd2GG4XgrrzPeE0BaSmNdULRbdkS6N8-Yi_HKOA@mail.gmail.com>
 <PAWPR02MB912888A8E6160276F1FE5AC480779@PAWPR02MB9128.eurprd02.prod.outlook.com>
 <PAWPR02MB9128FBAAD017D6CA7B3AC1AD80779@PAWPR02MB9128.eurprd02.prod.outlook.com>
Message-ID: <CALbt7NAFM+K1RnmtGzXCWsdk1k=A87LaacwdeJ6v2bz7Ois5Kg@mail.gmail.com>

Hi Maria,
Thanks for your comment --
I'm forwarding your question to the loris-dev mailing list for the benefit
of the community.
Thanks --
Christine

On Wed, May 10, 2023 at 8:57?AM Olano.Mar?a <molano at ext.cnio.es> wrote:

> Hello Camille!
>
>
>
> I did exactly that and it works like a charm, thank you for your advice. I
> would suggest maybe updating the LORIS config doc as there have been many
> steps that have not been reflected on it, and some MYSQL tables have
> changed names (such as *project_subproject_rel *) but nevertheless, thank
> you.
>
>
>
> Mar?a
>
>
>
> *From:* Olano.Mar?a
> *Sent:* 10 May 2023 13:24
> *Subject:* RE: [Loris-dev] VISIT LABEL
>
>
>
> Hello Camille!
>
>
>
> That was my line of thought too, the MySQL *project_subproject_rel* is
> correctly filled out, but the *visit_project_subproject_rel* needs a
> ?VisitID? that is present in the *visit* MySQL table which isn?t filled
> out as I didn?t see any indication of having to fill that table out in the
> setting LORIS instructions. The visit table asks for a VisitName and
> VisitLabel which I am not quite sure how to fill out, as I would just
> simply put the same answer for both of these variables. (AKA
> ClinicalPancreas)
>
>
>
> If that is indeed what I am supposed to do, I?ll be happy to do so.
>
>
>
> Thank you in advance
>
>
>
> Mar?a
>
>
>
> *Sent:* 09 May 2023 21:30
> *Subject:* Re: [Loris-dev] VISIT LABEL
>
>  Hello Mar?a,
>
>
> Do you have the correct visit / project / subproject relationships
> inserted into the *project_subproject_rel* and
> *visit_project_subproject_rel* tables? I believe this is what is causing
> the error.
>
> Best,
>
> *Camille Beaudoin* (she/her/elle)
>
> CCNA Software Developer
> Montreal Neurological Institute
> McGill University
>
> camille.beaudoin at mcin.ca
>
>
>
> On Tue, May 9, 2023 at 11:28?AM Christine Rogers <rogers at bic.mni.mcgill.ca>
> wrote:
>
> Here's the email with screenshots from Maria Olana --
>
>
>
> Thanks for nominating someone to answer :)
>
> ---------- Forwarded message ---------
> From: *Olano.Mar?a* <molano at ext.cnio.es>
> Date: Mon, May 8, 2023 at 6:44?AM
> Subject: [Loris-dev] VISIT LABEL
> To: loris-dev at bic.mni.mcgill.ca <loris-dev at bic.mni.mcgill.ca>
>
>
>
> Good morning!
>
>
>
> Our team is in the process of implementing visits to our subproject ID =3
> and we would like the visits to be predetermined sentences instead of VX.
> We changed the config.xml file as so:
>
>
>
>         <visitLabel subprojectID="3">
>
>             <!-- generation can have either 'user' or 'sequence' to denote
> user entered or a pre-defined sequence -->
>
>             <generation>sequence</generation>
>
>             <regex>/^[A-Z0-9]{20}$/i</regex>
>
>             <length>20</length>
>
>             <suggest>%value%</suggest> <!-- %value% will be substituted
> for the next unique number -->
>
>             <labelSet>
>
>                 <item value="ClinicalPancreas">Clinical Information from
> PDAC patients</item>
>
>                 <item value="ImagingPancreas">Pathological images from
> PDAC patients</item>
>
>             </labelSet>
>
>         </visitLabel>
>
>
>
> And the Visit_Window table in MySQL has been properly filled out as
> follows.
>
>
>
>
>
> However, when trying to create a timepoint for a patient in this
> subproject, an error pops up:
>
> These are obviously both linked as we have been able to create  a patient
> in both CASADP project and Pancreas subproject. We suspect the problem
> falls on our edited config.xml.
>
>
>
> If you could help us shed some light on this problem, we would be more
> than thankful.
>
>
>
> Mar?a
>
>
>
>
>
>
>
>
>
> [image: Image removed by sender. Hazte Amigo del CNIO. M?s investigaci?n,
> menos c?ncer] <https://www.cnio.es/es/colaborar/comocolaborar.asp>
>
> *Fb* Amigos del CNIO <https://www.facebook.com/AmigosdelCNIO/> |  *Tw*
> @CNIOStopCancer <https://twitter.com/CNIOStopCancer> |  *Youtube*
> canalcnio <https://www.youtube.com/canalcnio>
>
>
>
> **ADVERTENCIA LEGAL**: Este correo electr?nico, y en su caso los ficheros
> adjuntos, pueden contener informaci?n protegida para el uso exclusivo de su
> destinatario. Se proh?be la distribuci?n, reproducci?n o cualquier otro
> tipo de transmisi?n por parte de otra persona que no sea el destinatario.
> Si usted recibe por error este correo, se ruega comunicarlo al remitente y
> borrar el mensaje recibido.
> De conformidad con lo dispuesto en el Reglamento (UE) 2016/679 relativo a
> la protecci?n de los datos personales de las personas f?sicas, la
> informaci?n personal que nos pueda facilitar a trav?s de este correo
> electr?nico quedar? registrada por la Fundaci?n CNIO con la finalidad de
> tramitar el objeto del presente correo electr?nico. El tratamiento de sus
> datos personales se encuentra legitimado por ser necesario para gestionar
> el objeto del presente mensaje. Estos datos personales no ser?n comunicados
> a ning?n destinatario salvo a aquellos que usted nos autorice o as? venga
> exigido por una ley. Ud. podr? ejercer los derechos de acceso,
> rectificaci?n, supresi?n, limitaci?n de tratamiento, portabilidad y
> oposici?n en la siguiente direcci?n: c/Melchor Fernandez Almagro 3, 28029
> (Madrid). Podr? ponerse en contacto con el Delegado de Protecci?n de Datos
> en: delegado_lopd at cnio.es. Para el caso de que Ud. precise conocer
> informaci?n adicional sobre el tratamiento de sus datos personales, puede
> consultar dicha informaci?n adicional en el siguiente enlace dentro de
> nuestra p?gina web: https://www.cnio.es/es/privacidad/index.asp
>
> **LEGAL NOTICE**: This email and any attached files may contain protected
> information for the sole use of its intended recipient or addressee. Anyone
> other than the intended recipient or addressee is strictly prohibited from
> distributing, reproducing or transmitting the email and its contents in any
> way. If you receive this email in error, please notify the sender and
> delete the message.
> Pursuant to the provisions of EU Regulation 2016/679 regarding the
> protection of personal data, any personal information you provide through
> this email will be registered by the CNIO Foundation in order to deal with
> content of this email. Your personal data must be processed in order to be
> able to deal with the content and purpose of this message. Your personal
> details will not be passed on to anyone else unless you authorise us to do
> so or we are required to do so by law. You may exercise your rights
> regarding access, rectification, suppression, limitation of processing,
> portability and opposition by writing to the following address: c/Melchor
> Fernandez Almagro 3, 28029 (Madrid). You may contact the Data Protection
> Delegate (Delegado de Protecci?n de Datos) at: delegado_lopd at cnio.es. If
> you require further information about the processing of your personal data,
> go to the following link on our webpage:
> https://www.cnio.es/es/privacidad/index.asp
>
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
>
>
>
> --
>
> Research Project Officer
> christine.rogers at mcgill.ca
> McGill Centre for Integrative Neuroscience | MCIN.ca
>
> Montreal Neurological Institute-Hospital
>
> McGill University | Montreal | Canada
>
>
>
> **ADVERTENCIA LEGAL**: Este correo electr?nico, y en su caso los ficheros
> adjuntos, pueden contener informaci?n protegida para el uso exclusivo de su
> destinatario. Se proh?be la distribuci?n, reproducci?n o cualquier otro
> tipo de transmisi?n por parte de otra persona que no sea el destinatario.
> Si usted recibe por error este correo, se ruega comunicarlo al remitente y
> borrar el mensaje recibido.
> De conformidad con lo dispuesto en el Reglamento (UE) 2016/679 relativo a
> la protecci?n de los datos personales de las personas f?sicas, la
> informaci?n personal que nos pueda facilitar a trav?s de este correo
> electr?nico quedar? registrada por la Fundaci?n CNIO con la finalidad de
> tramitar el objeto del presente correo electr?nico. El tratamiento de sus
> datos personales se encuentra legitimado por ser necesario para gestionar
> el objeto del presente mensaje. Estos datos personales no ser?n comunicados
> a ning?n destinatario salvo a aquellos que usted nos autorice o as? venga
> exigido por una ley. Ud. podr? ejercer los derechos de acceso,
> rectificaci?n, supresi?n, limitaci?n de tratamiento, portabilidad y
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-- 
Research Project Officer
christine.rogers at mcgill.ca
McGill Centre for Integrative Neuroscience | MCIN.ca
Montreal Neurological Institute-Hospital
McGill University | Montreal | Canada
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