From julianpitney at gmail.com Mon Jul 10 12:09:19 2023 From: julianpitney at gmail.com (Julian Pitney) Date: Mon, 10 Jul 2023 12:09:19 -0400 Subject: [Loris-dev] Loris MRI Troubleshooting Message-ID: Hi all, Our team is working on getting Loris MRI up and running. We have the web-server and database server up and running with no issues. We've also gone through the install instructions for Loris MRI. We're stuck on uploading an MRI through the GUI image uploader. *Versions: *loris v24.1.4 & loris-mri v24.1.11. *DICOMs:* (From NIH's visible human project) See: https://www.nlm.nih.gov/research/visible/visible_human.html https://data.lhncbc.nlm.nih.gov/public/Visible-Human/Additional-Head-Images/MR_CT_DICOM/MRI/T1/index.html *File name:* MTL0000_951855_V1.zip First we create a new candidate: *DCCID: 951855 PSCID: MTL0000* Then we create a new visit for that candidate and set the visit label to V1. Finally, we try to upload *MTL0000_951855_V1.zip *through the imaging uploader GUI. *The Error:*[image: image.png] *Details:* > *Processing details for upload 1 of MTL0000 (CandID 951855) at V1:* > > *The candidate info validation has passed.* > > *The dicomTar.pl execution has successfully completed* > > *==> verifying dicom archive md5sum (checksum)* > > *-> checksum for target : 10ee0f329d92e5989984e3a74cb9d5b3* > *-> checksum from database : 10ee0f329d92e5989984e3a74cb9d5b3* > > *==> Verifying acquisition center* > *-> Center Name : UNKN* > *-> CenterID : 0* > > > *==> Trying to determine scanner ID* > > * ERROR: The validation has failed. Either re-run the validation again and > fix the problem. Or re-run tarchiveLoader.pl using -force to force the > execution.* > > > *The tarchiveLoader.pl insertion script has failed.* > *Upload processing is finished and failed* > Further, I'm curious about *how* tightly-coupled the DICOM data is to loris-isms. It seems the perl code responsible for processing the DICOM pulls various pieces of data out of the DICOM and inserts those values into the database. Do *all* MRI's associated with a candidate need to have their DICOM metadata coded to that candidate, or should the file name providing the PSC/CAND ID's be enough? Hoping someone can help us get the MRI pipeline running end to end :) Thanks, John -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: image.png Type: image/png Size: 159762 bytes Desc: not available URL: From tikal004 at umn.edu Mon Jul 17 15:24:03 2023 From: tikal004 at umn.edu (Barry Tikalsky) Date: Mon, 17 Jul 2023 14:24:03 -0500 Subject: [Loris-dev] REDCap 2 LINST Message-ID: Hello LORIS devs, I'm hoping to pull in REDCap data to a LORIS instance, and I see you have code that does that here: https://github.com/aces/Loris/pull/8282 Is there a plan to merge this into main for an upcoming release? -- Barry Tikalsky Research Professional | Developmental Cognition and Neuroimaging Labs | Masonic Institute for the Developing Brain -------------- next part -------------- An HTML attachment was scrubbed... URL: