From AMORALESPINZON at BWH.HARVARD.EDU Thu Apr 14 11:18:19 2022 From: AMORALESPINZON at BWH.HARVARD.EDU (Morales Pinzon, Alfredo) Date: Thu, 14 Apr 2022 15:18:19 +0000 Subject: [Loris-dev] Permission Denied - candidate_profile/{CandID}/ Message-ID: <17129F9E-16E5-43F7-BE2B-C4834C3AFF06@bwh.harvard.edu> Dear LorisDev Team, I am facing a ?Permission Denied? message when accessing candidates recently created for two projects, as shown in the attached image. I have no issues accessing Candidates from old studies. I started having this issue after updating to Loris v23.0.3. Could you help figuring out how to solve this issue? Best regards, Alfredo. [cid:1635D1D3-6F1B-4770-BCC6-375E5FF048E4] The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: LORIS_Permission_Denied.png Type: image/png Size: 107670 bytes Desc: LORIS_Permission_Denied.png URL: From wangshen.mcin at gmail.com Thu Apr 14 12:35:53 2022 From: wangshen.mcin at gmail.com (Shen Wang) Date: Thu, 14 Apr 2022 12:35:53 -0400 Subject: [Loris-dev] Permission Denied - candidate_profile/{CandID}/ In-Reply-To: <17129F9E-16E5-43F7-BE2B-C4834C3AFF06@bwh.harvard.edu> References: <17129F9E-16E5-43F7-BE2B-C4834C3AFF06@bwh.harvard.edu> Message-ID: Hi Alfredo, I am not sure what the exact issue is on your Loris instance. You may try to add permission into your database. INSERT INTO `user_psc_rel` (`UserID`, `CenterID`) VALUES (1,(select RegistrationCenterID from candidate where CandID='830085')); INSERT INTO `user_project_rel` (`UserID`, `ProjectID`) VALUES (1,(select RegistrationProjectID from candidate where CandID='830085')); If it doesn't work, others will continue to help you solve the issue. Good Luck Shen On Thu, Apr 14, 2022 at 11:18 AM Morales Pinzon, Alfredo < AMORALESPINZON at bwh.harvard.edu> wrote: > Dear LorisDev Team, > > I am facing a ?Permission Denied? message when accessing candidates > recently created for two projects, as shown in the attached image. I have > no issues accessing Candidates from old studies. I started having this > issue after updating to Loris v23.0.3. Could you help figuring out how to > solve this issue? > > Best regards, > Alfredo. > > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://www.massgeneralbrigham.org/complianceline . > > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. > _______________________________________________ > Loris-dev mailing list > Loris-dev at bic.mni.mcgill.ca > https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev > -- Shen Wang Loris Developer Montreal Neurological Institute McGill University -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: LORIS_Permission_Denied.png Type: image/png Size: 107670 bytes Desc: not available URL: From molano at ext.cnio.es Wed Apr 20 11:06:08 2022 From: molano at ext.cnio.es (=?iso-8859-1?Q?Olano=2EMar=EDa?=) Date: Wed, 20 Apr 2022 15:06:08 +0000 Subject: [Loris-dev] LORIS installer error Message-ID: <1AAB0BC03205B240B7809934CFCF8DF52E1819@DONAR.cnio.es> Good day, We are in the process of installing the latest LORIS on a Linux operative system. We are able to go to /installdb.php and fill out our mysql connection information. It gives us a And the file config.xml is indeed at/var/www/felix/project/config.xml and can be accessed. The problem arises once we visit http://localhost , where a completely blank page greets us. We have tried accessing with our own IP Address, and still we obtain the same answer. We have all the necessary updated prerequisites, our MySQL version is 8.0.28-0ubuntu0.20.04.3, and when we run this : "sudo tail -f /var/log/apache2/loris-error.log", the following error pops up. [Tue Apr 19 15:19:45.167187 2022] [php7:error] [pid 4350] [client 127.0.0.1:39610] PHP Fatal error: Uncaught Error: Interface 'Psr\\Log\\LoggerAwareInterface' not found in /var/www/felix/php/libraries/Database.class.inc:16\nStack trace:\n#0 /var/www/felix/vendor/composer/ClassLoader.php(571): include()\n#1 /var/www/felix/vendor/composer/ClassLoader.php(428): Composer\\Autoload\\includeFile()\n#2 [internal function]: Composer\\Autoload\\ClassLoader->loadClass()\n#3 /var/www/felix/php/libraries/NDB_Factory.class.inc(168): spl_autoload_call()\n#4 /var/www/felix/php/libraries/NDB_Client.class.inc(59): NDB_Factory->database()\n#5 /var/www/felix/htdocs/index.php(34): NDB_Client->initialize()\n#6 {main}\n thrown in /var/www/felix/php/libraries/Database.class.inc on line 16 We really do not know how to proceed further from this point onward. Kindly let us know how to proceed further in order to get the LORIS installed. Thank you. Your Sincerely, Mar?a [Hazte Amigo del CNIO. M?s investigaci?n, menos c?ncer] Fb Amigos del CNIO | Tw @CNIOStopCancer | Youtube canalcnio **ADVERTENCIA LEGAL**: Este correo electr?nico, y en su caso los ficheros adjuntos, pueden contener informaci?n protegida para el uso exclusivo de su destinatario. Se proh?be la distribuci?n, reproducci?n o cualquier otro tipo de transmisi?n por parte de otra persona que no sea el destinatario. Si usted recibe por error este correo, se ruega comunicarlo al remitente y borrar el mensaje recibido. De conformidad con lo dispuesto en el Reglamento (UE) 2016/679 relativo a la protecci?n de los datos personales de las personas f?sicas, la informaci?n personal que nos pueda facilitar a trav?s de este correo electr?nico quedar? registrada por la Fundaci?n CNIO con la finalidad de tramitar el objeto del presente correo electr?nico. El tratamiento de sus datos personales se encuentra legitimado por ser necesario para gestionar el objeto del presente mensaje. Estos datos personales no ser?n comunicados a ning?n destinatario salvo a aquellos que usted nos autorice o as? venga exigido por una ley. Ud. podr? ejercer los derechos de acceso, rectificaci?n, supresi?n, limitaci?n de tratamiento, portabilidad y oposici?n en la siguiente direcci?n: c/Melchor Fernandez Almagro 3, 28029 (Madrid). Podr? ponerse en contacto con el Delegado de Protecci?n de Datos en: delegado_lopd at cnio.es. Para el caso de que Ud. precise conocer informaci?n adicional sobre el tratamiento de sus datos personales, puede consultar dicha informaci?n adicional en el siguiente enlace dentro de nuestra p?gina web: https://www.cnio.es/es/privacidad/index.asp **LEGAL NOTICE**: This email and any attached files may contain protected information for the sole use of its intended recipient or addressee. Anyone other than the intended recipient or addressee is strictly prohibited from distributing, reproducing or transmitting the email and its contents in any way. If you receive this email in error, please notify the sender and delete the message. Pursuant to the provisions of EU Regulation 2016/679 regarding the protection of personal data, any personal information you provide through this email will be registered by the CNIO Foundation in order to deal with content of this email. Your personal data must be processed in order to be able to deal with the content and purpose of this message. Your personal details will not be passed on to anyone else unless you authorise us to do so or we are required to do so by law. You may exercise your rights regarding access, rectification, suppression, limitation of processing, portability and opposition by writing to the following address: c/Melchor Fernandez Almagro 3, 28029 (Madrid). You may contact the Data Protection Delegate (Delegado de Protecci?n de Datos) at: delegado_lopd at cnio.es. If you require further information about the processing of your personal data, go to the following link on our webpage: https://www.cnio.es/es/privacidad/index.asp -------------- next part -------------- An HTML attachment was scrubbed... URL: From wangshen.mcin at gmail.com Wed Apr 20 11:15:14 2022 From: wangshen.mcin at gmail.com (Shen Wang) Date: Wed, 20 Apr 2022 11:15:14 -0400 Subject: [Loris-dev] LORIS installer error In-Reply-To: <1AAB0BC03205B240B7809934CFCF8DF52E1819@DONAR.cnio.es> References: <1AAB0BC03205B240B7809934CFCF8DF52E1819@DONAR.cnio.es> Message-ID: Hi Mar?a, It seems like the "composer install" command line is not running properly. You may try to run "composer install" manually under your Loris instance folder. Best regards Shen On Wed, Apr 20, 2022 at 11:06 AM Olano.Mar?a wrote: > Good day, > > > > We are in the process of installing the latest LORIS on a Linux operative > system. We are able to go to /installdb.php and fill out our > mysql connection information. It gives us a > > > > > > > Wrote LORIS config file to /var/www/felix/project/config.xml. > > > > You should now be able to access LORIS by visiting http://localhost and > logging in with the front end admin username and password you configured on > the previous page./> > > > > And the file config.xml is indeed at/var/www/felix/project/config.xml > > and can be accessed. > > > > The problem arises once we visit http://localhost , where a completely > blank page greets us. We have tried accessing with our own IP Address, and > still we obtain the same answer. > > > > We have all the necessary updated prerequisites, our MySQL version is > 8.0.28-0ubuntu0.20.04.3, and when we run this : "sudo tail -f > /var/log/apache2/loris-error.log", the following error pops up. > > > > [Tue Apr 19 15:19:45.167187 2022] [php7:error] [pid 4350] [client > 127.0.0.1:39610] PHP Fatal error: Uncaught Error: Interface > 'Psr\\Log\\LoggerAwareInterface' not found in > /var/www/felix/php/libraries/Database.class.inc:16\nStack trace:\n#0 > > /var/www/felix/vendor/composer/ClassLoader.php(571): include()\n#1 > > /var/www/felix/vendor/composer/ClassLoader.php(428): > > Composer\\Autoload\\includeFile()\n#2 [internal function]: > > Composer\\Autoload\\ClassLoader->loadClass()\n#3 > > /var/www/felix/php/libraries/NDB_Factory.class.inc(168): > > spl_autoload_call()\n#4 > > /var/www/felix/php/libraries/NDB_Client.class.inc(59): > > NDB_Factory->database()\n#5 /var/www/felix/htdocs/index.php(34): > > NDB_Client->initialize()\n#6 {main}\n thrown in > /var/www/felix/php/libraries/Database.class.inc on line 16 > > > > We really do not know how to proceed further from this point onward. > > Kindly let us know how to proceed further in order to get the LORIS > installed. > > Thank you. > > > > Your Sincerely, > > > > Mar?a > > > > > > [image: Hazte Amigo del CNIO. M?s investigaci?n, menos c?ncer] > > > *Fb* Amigos del CNIO | *Tw* > @CNIOStopCancer | *Youtube* > canalcnio > > > **ADVERTENCIA LEGAL**: Este correo electr?nico, y en su caso los ficheros > adjuntos, pueden contener informaci?n protegida para el uso exclusivo de su > destinatario. Se proh?be la distribuci?n, reproducci?n o cualquier otro > tipo de transmisi?n por parte de otra persona que no sea el destinatario. > Si usted recibe por error este correo, se ruega comunicarlo al remitente y > borrar el mensaje recibido. > De conformidad con lo dispuesto en el Reglamento (UE) 2016/679 relativo a > la protecci?n de los datos personales de las personas f?sicas, la > informaci?n personal que nos pueda facilitar a trav?s de este correo > electr?nico quedar? registrada por la Fundaci?n CNIO con la finalidad de > tramitar el objeto del presente correo electr?nico. El tratamiento de sus > datos personales se encuentra legitimado por ser necesario para gestionar > el objeto del presente mensaje. Estos datos personales no ser?n comunicados > a ning?n destinatario salvo a aquellos que usted nos autorice o as? venga > exigido por una ley. Ud. podr? ejercer los derechos de acceso, > rectificaci?n, supresi?n, limitaci?n de tratamiento, portabilidad y > oposici?n en la siguiente direcci?n: c/Melchor Fernandez Almagro 3, 28029 > (Madrid). Podr? ponerse en contacto con el Delegado de Protecci?n de Datos > en: delegado_lopd at cnio.es. Para el caso de que Ud. precise conocer > informaci?n adicional sobre el tratamiento de sus datos personales, puede > consultar dicha informaci?n adicional en el siguiente enlace dentro de > nuestra p?gina web: https://www.cnio.es/es/privacidad/index.asp > > **LEGAL NOTICE**: This email and any attached files may contain protected > information for the sole use of its intended recipient or addressee. Anyone > other than the intended recipient or addressee is strictly prohibited from > distributing, reproducing or transmitting the email and its contents in any > way. If you receive this email in error, please notify the sender and > delete the message. > Pursuant to the provisions of EU Regulation 2016/679 regarding the > protection of personal data, any personal information you provide through > this email will be registered by the CNIO Foundation in order to deal with > content of this email. Your personal data must be processed in order to be > able to deal with the content and purpose of this message. Your personal > details will not be passed on to anyone else unless you authorise us to do > so or we are required to do so by law. You may exercise your rights > regarding access, rectification, suppression, limitation of processing, > portability and opposition by writing to the following address: c/Melchor > Fernandez Almagro 3, 28029 (Madrid). You may contact the Data Protection > Delegate (Delegado de Protecci?n de Datos) at: delegado_lopd at cnio.es. If > you require further information about the processing of your personal data, > go to the following link on our webpage: > https://www.cnio.es/es/privacidad/index.asp > _______________________________________________ > Loris-dev mailing list > Loris-dev at bic.mni.mcgill.ca > https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev > -- Shen Wang Loris Developer Montreal Neurological Institute McGill University -------------- next part -------------- An HTML attachment was scrubbed... URL: From AMORALESPINZON at BWH.HARVARD.EDU Mon Apr 25 14:16:04 2022 From: AMORALESPINZON at BWH.HARVARD.EDU (Morales Pinzon, Alfredo) Date: Mon, 25 Apr 2022 18:16:04 +0000 Subject: [Loris-dev] Permission Denied - candidate_profile/{CandID}/ In-Reply-To: References: <17129F9E-16E5-43F7-BE2B-C4834C3AFF06@bwh.harvard.edu> Message-ID: Hi Shen, Thank you for your answer. It worked! Best regards, Alfredo. On Apr 14, 2022, at 12:35 PM, Shen Wang > wrote: External Email - Use Caution Hi Alfredo, I am not sure what the exact issue is on your Loris instance. You may try to add permission into your database. INSERT INTO `user_psc_rel` (`UserID`, `CenterID`) VALUES (1,(select RegistrationCenterID from candidate where CandID='830085')); INSERT INTO `user_project_rel` (`UserID`, `ProjectID`) VALUES (1,(select RegistrationProjectID from candidate where CandID='830085')); If it doesn't work, others will continue to help you solve the issue. Good Luck Shen On Thu, Apr 14, 2022 at 11:18 AM Morales Pinzon, Alfredo > wrote: Dear LorisDev Team, I am facing a ?Permission Denied? message when accessing candidates recently created for two projects, as shown in the attached image. I have no issues accessing Candidates from old studies. I started having this issue after updating to Loris v23.0.3. Could you help figuring out how to solve this issue? Best regards, Alfredo. The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. _______________________________________________ Loris-dev mailing list Loris-dev at bic.mni.mcgill.ca https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev -- Shen Wang Loris Developer Montreal Neurological Institute McGill University The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. -------------- next part -------------- An HTML attachment was scrubbed... URL: