[Loris-dev] LORIS - Upload nifti and minc

[Cecile Madjar]

Hi Alfredo,

Very sorry for the late reply. In short, yes, it is possible to do both.

It is possible to insert MINC files in LORIS by using the LORIS-MRI script
called minc_insertion.pl
<https://github.com/aces/Loris-MRI/blob/main/uploadNeuroDB/minc_insertion.pl>
in
the uploadNeuroDB folder. If you run perl minc_insertion.pl -h; you will
see the explanation on how to run the script.

Regarding NIfTI files that are not in BIDS, you can use the LORIS-MRI
script called imaging_non_minc_insertion.pl
<https://github.com/aces/Loris-MRI/blob/main/uploadNeuroDB/imaging_non_minc_insertion.pl>
in
the same uploadNeuroDB folder. Running perl imaging_non_minc_insertion.pl
should give you all the information you need in order to run the script.

Hope this helps,

Cécile

On Thu, Jan 14, 2021 at 3:28 PM Morales Pinzon, Alfredo <
AMORALESPINZON at bwh.harvard.edu> wrote:

> Dear LorisDev team,
>
> Is is possible to upload nifti and minc files into LORIS, for instance to
> a given visit, without having the files in BIDS format?
>
> Best regards,
> Alfredo.
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