From cartik.sharma at gmail.com  Mon Aug 16 12:03:55 2021
From: cartik.sharma at gmail.com (Cartik Sharma)
Date: Mon, 16 Aug 2021 12:03:55 -0400
Subject: [Loris-dev] (no subject)
Message-ID: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>

Dear all,

I'm getting this error while running make dev in the Loris directory.

npm run compile

    ERROR in EACCES: permission denied, scandir
'/home/lorisadmin/Loris/smarty/templates_c'

templates_c is an empty directory.

Any suggestions, please let me know.
Best regards,
Cartik Sharma
about.me/sharmacartik

From samirdas99 at gmail.com  Mon Aug 16 12:07:28 2021
From: samirdas99 at gmail.com (Samir Das)
Date: Mon, 16 Aug 2021 12:07:28 -0400
Subject: [Loris-dev] (no subject)
In-Reply-To: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>
References: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>
Message-ID: <CAF6xo=PTmOS=G=OfA9W+S_oHfqWdckm4rFius0v2pM+o_jsQ4g@mail.gmail.com>

Hi Cartik,

This is one directory that needs to be there to write temporary template
files to, and you just need to change the permissions to 775 (or maybe even
777) and all should work.

Best,

Samir Das

On Mon, Aug 16, 2021 at 12:05 PM Cartik Sharma <cartik.sharma at gmail.com>
wrote:

> Dear all,
>
> I'm getting this error while running make dev in the Loris directory.
>
> npm run compile
>
>     ERROR in EACCES: permission denied, scandir
> '/home/lorisadmin/Loris/smarty/templates_c'
>
> templates_c is an empty directory.
>
> Any suggestions, please let me know.
> Best regards,
> Cartik Sharma
> about.me/sharmacartik
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
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From cartik.sharma at gmail.com  Mon Aug 16 13:29:10 2021
From: cartik.sharma at gmail.com (Cartik Sharma)
Date: Mon, 16 Aug 2021 13:29:10 -0400
Subject: [Loris-dev] (no subject)
In-Reply-To: <CAF6xo=PTmOS=G=OfA9W+S_oHfqWdckm4rFius0v2pM+o_jsQ4g@mail.gmail.com>
References: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>
 <CAF6xo=PTmOS=G=OfA9W+S_oHfqWdckm4rFius0v2pM+o_jsQ4g@mail.gmail.com>
Message-ID: <CANP4vsik0wT1J0TKu9GmBBx6OoaQqcYP-0QGv6g_kcFPaw613Q@mail.gmail.com>

hi Samir,

This seems to work.

However when I try to launch 132.206.37.11/installdb.php

I get an error: 403 access denied.

Best regards,
Cartik

On Mon, Aug 16, 2021 at 12:08 PM Samir Das <samirdas99 at gmail.com> wrote:

> Hi Cartik,
>
> This is one directory that needs to be there to write temporary template
> files to, and you just need to change the permissions to 775 (or maybe even
> 777) and all should work.
>
> Best,
>
> Samir Das
>
> On Mon, Aug 16, 2021 at 12:05 PM Cartik Sharma <cartik.sharma at gmail.com>
> wrote:
>
>> Dear all,
>>
>> I'm getting this error while running make dev in the Loris directory.
>>
>> npm run compile
>>
>>     ERROR in EACCES: permission denied, scandir
>> '/home/lorisadmin/Loris/smarty/templates_c'
>>
>> templates_c is an empty directory.
>>
>> Any suggestions, please let me know.
>> Best regards,
>> Cartik Sharma
>> about.me/sharmacartik
>> _______________________________________________
>> Loris-dev mailing list
>> Loris-dev at bic.mni.mcgill.ca
>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>


-- 
<https://about.me/sharmacartik?promo=email_sig&utm_source=product&utm_medium=email_sig&utm_campaign=gmail_api>
Cartik Sharma
about.me/sharmacartik
<https://about.me/sharmacartik?promo=email_sig&utm_source=product&utm_medium=email_sig&utm_campaign=gmail_api>
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From dave.macfarlane at mcin.ca  Mon Aug 16 13:43:30 2021
From: dave.macfarlane at mcin.ca (Dave MacFarlane)
Date: Mon, 16 Aug 2021 13:43:30 -0400
Subject: [Loris-dev] (no subject)
In-Reply-To: <CANP4vsik0wT1J0TKu9GmBBx6OoaQqcYP-0QGv6g_kcFPaw613Q@mail.gmail.com>
References: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>
 <CAF6xo=PTmOS=G=OfA9W+S_oHfqWdckm4rFius0v2pM+o_jsQ4g@mail.gmail.com>
 <CANP4vsik0wT1J0TKu9GmBBx6OoaQqcYP-0QGv6g_kcFPaw613Q@mail.gmail.com>
Message-ID: <CAN9cDwGX1NOWVhbDqDSnHXu0JFten9YXgthO7yCyf6GFsAGfzQ@mail.gmail.com>

Hi Cartik,

I'm not seeing anywhere in the code for installdb.php that can return a 403
error. Are you sure there's not some kind of proxy/firewall/VPN/etc in
front of your LORIS instance preventing you from accessing it?

- Dave

On Mon, Aug 16, 2021 at 1:30 PM Cartik Sharma <cartik.sharma at gmail.com>
wrote:

> hi Samir,
>
> This seems to work.
>
> However when I try to launch 132.206.37.11/installdb.php
>
> I get an error: 403 access denied.
>
> Best regards,
> Cartik
>
> On Mon, Aug 16, 2021 at 12:08 PM Samir Das <samirdas99 at gmail.com> wrote:
>
>> Hi Cartik,
>>
>> This is one directory that needs to be there to write temporary template
>> files to, and you just need to change the permissions to 775 (or maybe even
>> 777) and all should work.
>>
>> Best,
>>
>> Samir Das
>>
>> On Mon, Aug 16, 2021 at 12:05 PM Cartik Sharma <cartik.sharma at gmail.com>
>> wrote:
>>
>>> Dear all,
>>>
>>> I'm getting this error while running make dev in the Loris directory.
>>>
>>> npm run compile
>>>
>>>     ERROR in EACCES: permission denied, scandir
>>> '/home/lorisadmin/Loris/smarty/templates_c'
>>>
>>> templates_c is an empty directory.
>>>
>>> Any suggestions, please let me know.
>>> Best regards,
>>> Cartik Sharma
>>> about.me/sharmacartik
>>> _______________________________________________
>>> Loris-dev mailing list
>>> Loris-dev at bic.mni.mcgill.ca
>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>>
>> _______________________________________________
>> Loris-dev mailing list
>> Loris-dev at bic.mni.mcgill.ca
>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>
>
>
> --
>
> <https://about.me/sharmacartik?promo=email_sig&utm_source=product&utm_medium=email_sig&utm_campaign=gmail_api>
> Cartik Sharma
> about.me/sharmacartik
> <https://about.me/sharmacartik?promo=email_sig&utm_source=product&utm_medium=email_sig&utm_campaign=gmail_api>
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
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From cartik.sharma at gmail.com  Mon Aug 16 13:45:30 2021
From: cartik.sharma at gmail.com (Cartik Sharma)
Date: Mon, 16 Aug 2021 13:45:30 -0400
Subject: [Loris-dev] (no subject)
In-Reply-To: <CAN9cDwGX1NOWVhbDqDSnHXu0JFten9YXgthO7yCyf6GFsAGfzQ@mail.gmail.com>
References: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>
 <CAF6xo=PTmOS=G=OfA9W+S_oHfqWdckm4rFius0v2pM+o_jsQ4g@mail.gmail.com>
 <CANP4vsik0wT1J0TKu9GmBBx6OoaQqcYP-0QGv6g_kcFPaw613Q@mail.gmail.com>
 <CAN9cDwGX1NOWVhbDqDSnHXu0JFten9YXgthO7yCyf6GFsAGfzQ@mail.gmail.com>
Message-ID: <CANP4vshaeBuKo93c8OH+S99GSe68YedDMXJVJFreyEpCDsQ7aQ@mail.gmail.com>

I'm using ssh csharma at login.acelab.ca through my ldap account to
access cobra-lab-dev.loris.ca

Best regards,
Cartik

On Mon, Aug 16, 2021 at 1:43 PM Dave MacFarlane <dave.macfarlane at mcin.ca> wrote:
>
> Hi Cartik,
>
> I'm not seeing anywhere in the code for installdb.php that can return a 403 error. Are you sure there's not some kind of proxy/firewall/VPN/etc in front of your LORIS instance preventing you from accessing it?
>
> - Dave
>
> On Mon, Aug 16, 2021 at 1:30 PM Cartik Sharma <cartik.sharma at gmail.com> wrote:
>>
>> hi Samir,
>>
>> This seems to work.
>>
>> However when I try to launch 132.206.37.11/installdb.php
>>
>> I get an error: 403 access denied.
>>
>> Best regards,
>> Cartik
>>
>> On Mon, Aug 16, 2021 at 12:08 PM Samir Das <samirdas99 at gmail.com> wrote:
>>>
>>> Hi Cartik,
>>>
>>> This is one directory that needs to be there to write temporary template files to, and you just need to change the permissions to 775 (or maybe even 777) and all should work.
>>>
>>> Best,
>>>
>>> Samir Das
>>>
>>> On Mon, Aug 16, 2021 at 12:05 PM Cartik Sharma <cartik.sharma at gmail.com> wrote:
>>>>
>>>> Dear all,
>>>>
>>>> I'm getting this error while running make dev in the Loris directory.
>>>>
>>>> npm run compile
>>>>
>>>>     ERROR in EACCES: permission denied, scandir
>>>> '/home/lorisadmin/Loris/smarty/templates_c'
>>>>
>>>> templates_c is an empty directory.
>>>>
>>>> Any suggestions, please let me know.
>>>> Best regards,
>>>> Cartik Sharma
>>>> about.me/sharmacartik
>>>> _______________________________________________
>>>> Loris-dev mailing list
>>>> Loris-dev at bic.mni.mcgill.ca
>>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>>
>>> _______________________________________________
>>> Loris-dev mailing list
>>> Loris-dev at bic.mni.mcgill.ca
>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>
>>
>>
>> --
>> Cartik Sharma
>> about.me/sharmacartik
>> _______________________________________________
>> Loris-dev mailing list
>> Loris-dev at bic.mni.mcgill.ca
>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev



-- 
Cartik Sharma
about.me/sharmacartik

From melanie.legault2 at mcgill.ca  Mon Aug 16 14:11:17 2021
From: melanie.legault2 at mcgill.ca (Melanie Legault, Mrs)
Date: Mon, 16 Aug 2021 18:11:17 +0000
Subject: [Loris-dev] (no subject)
In-Reply-To: <CANP4vshaeBuKo93c8OH+S99GSe68YedDMXJVJFreyEpCDsQ7aQ@mail.gmail.com>
References: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>
 <CAF6xo=PTmOS=G=OfA9W+S_oHfqWdckm4rFius0v2pM+o_jsQ4g@mail.gmail.com>
 <CANP4vsik0wT1J0TKu9GmBBx6OoaQqcYP-0QGv6g_kcFPaw613Q@mail.gmail.com>
 <CAN9cDwGX1NOWVhbDqDSnHXu0JFten9YXgthO7yCyf6GFsAGfzQ@mail.gmail.com>
 <CANP4vshaeBuKo93c8OH+S99GSe68YedDMXJVJFreyEpCDsQ7aQ@mail.gmail.com>
Message-ID: <YQBPR0101MB455535CCAD9D3354EC296F44CFFD9@YQBPR0101MB4555.CANPRD01.PROD.OUTLOOK.COM>

What is the ownership and permission of the /path/to/Loris/ directory and subdir?

Apache need to be able to read everything and write to the ../project and ../smarty directory.
Usually, the group ownership is set to apache (httpd or apache depending on OS)
with read permission for the group everywhere and write permission on the 2 dir above.

M?lanie

________________________________
From: loris-dev-bounces at bic.mni.mcgill.ca <loris-dev-bounces at bic.mni.mcgill.ca> on behalf of Cartik Sharma <cartik.sharma at gmail.com>
Sent: August 16, 2021 13:45
To: Dave MacFarlane <dave.macfarlane at mcin.ca>
Cc: loris-dev <loris-dev at bic.mni.mcgill.ca>; Samir Das <samirdas99 at gmail.com>
Subject: Re: [Loris-dev] (no subject)

I'm using ssh csharma at login.acelab.ca through my ldap account to
access cobra-lab-dev.loris.ca

Best regards,
Cartik

On Mon, Aug 16, 2021 at 1:43 PM Dave MacFarlane <dave.macfarlane at mcin.ca> wrote:
>
> Hi Cartik,
>
> I'm not seeing anywhere in the code for installdb.php that can return a 403 error. Are you sure there's not some kind of proxy/firewall/VPN/etc in front of your LORIS instance preventing you from accessing it?
>
> - Dave
>
> On Mon, Aug 16, 2021 at 1:30 PM Cartik Sharma <cartik.sharma at gmail.com> wrote:
>>
>> hi Samir,
>>
>> This seems to work.
>>
>> However when I try to launch 132.206.37.11/installdb.php
>>
>> I get an error: 403 access denied.
>>
>> Best regards,
>> Cartik
>>
>> On Mon, Aug 16, 2021 at 12:08 PM Samir Das <samirdas99 at gmail.com> wrote:
>>>
>>> Hi Cartik,
>>>
>>> This is one directory that needs to be there to write temporary template files to, and you just need to change the permissions to 775 (or maybe even 777) and all should work.
>>>
>>> Best,
>>>
>>> Samir Das
>>>
>>> On Mon, Aug 16, 2021 at 12:05 PM Cartik Sharma <cartik.sharma at gmail.com> wrote:
>>>>
>>>> Dear all,
>>>>
>>>> I'm getting this error while running make dev in the Loris directory.
>>>>
>>>> npm run compile
>>>>
>>>>     ERROR in EACCES: permission denied, scandir
>>>> '/home/lorisadmin/Loris/smarty/templates_c'
>>>>
>>>> templates_c is an empty directory.
>>>>
>>>> Any suggestions, please let me know.
>>>> Best regards,
>>>> Cartik Sharma
>>>> about.me/sharmacartik
>>>> _______________________________________________
>>>> Loris-dev mailing list
>>>> Loris-dev at bic.mni.mcgill.ca
>>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>>
>>> _______________________________________________
>>> Loris-dev mailing list
>>> Loris-dev at bic.mni.mcgill.ca
>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>
>>
>>
>> --
>> Cartik Sharma
>> about.me/sharmacartik
>> _______________________________________________
>> Loris-dev mailing list
>> Loris-dev at bic.mni.mcgill.ca
>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev



--
Cartik Sharma
about.me/sharmacartik
_______________________________________________
Loris-dev mailing list
Loris-dev at bic.mni.mcgill.ca
https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
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From cecile.madjar at mcin.ca  Mon Aug 16 14:12:01 2021
From: cecile.madjar at mcin.ca (Cecile Madjar)
Date: Mon, 16 Aug 2021 14:12:01 -0400
Subject: [Loris-dev] (no subject)
In-Reply-To: <CANP4vshaeBuKo93c8OH+S99GSe68YedDMXJVJFreyEpCDsQ7aQ@mail.gmail.com>
References: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>
 <CAF6xo=PTmOS=G=OfA9W+S_oHfqWdckm4rFius0v2pM+o_jsQ4g@mail.gmail.com>
 <CANP4vsik0wT1J0TKu9GmBBx6OoaQqcYP-0QGv6g_kcFPaw613Q@mail.gmail.com>
 <CAN9cDwGX1NOWVhbDqDSnHXu0JFten9YXgthO7yCyf6GFsAGfzQ@mail.gmail.com>
 <CANP4vshaeBuKo93c8OH+S99GSe68YedDMXJVJFreyEpCDsQ7aQ@mail.gmail.com>
Message-ID: <CAMkiY3fFFSK4tGUt-7qOBHOFkZUOkYez+gKDh1XBg8hV7RZcNA@mail.gmail.com>

Indeed, I believe the issue you are encountering is due to the frontend not
being open to the world. You might need to use ssh tunnels in order to see
the frontend since you do not have a McGill account and cannot use the
McGill VPN to access the frontend.

On Mon, Aug 16, 2021 at 1:46 PM Cartik Sharma <cartik.sharma at gmail.com>
wrote:

> I'm using ssh csharma at login.acelab.ca through my ldap account to
> access cobra-lab-dev.loris.ca
>
> Best regards,
> Cartik
>
> On Mon, Aug 16, 2021 at 1:43 PM Dave MacFarlane <dave.macfarlane at mcin.ca>
> wrote:
> >
> > Hi Cartik,
> >
> > I'm not seeing anywhere in the code for installdb.php that can return a
> 403 error. Are you sure there's not some kind of proxy/firewall/VPN/etc in
> front of your LORIS instance preventing you from accessing it?
> >
> > - Dave
> >
> > On Mon, Aug 16, 2021 at 1:30 PM Cartik Sharma <cartik.sharma at gmail.com>
> wrote:
> >>
> >> hi Samir,
> >>
> >> This seems to work.
> >>
> >> However when I try to launch 132.206.37.11/installdb.php
> >>
> >> I get an error: 403 access denied.
> >>
> >> Best regards,
> >> Cartik
> >>
> >> On Mon, Aug 16, 2021 at 12:08 PM Samir Das <samirdas99 at gmail.com>
> wrote:
> >>>
> >>> Hi Cartik,
> >>>
> >>> This is one directory that needs to be there to write temporary
> template files to, and you just need to change the permissions to 775 (or
> maybe even 777) and all should work.
> >>>
> >>> Best,
> >>>
> >>> Samir Das
> >>>
> >>> On Mon, Aug 16, 2021 at 12:05 PM Cartik Sharma <
> cartik.sharma at gmail.com> wrote:
> >>>>
> >>>> Dear all,
> >>>>
> >>>> I'm getting this error while running make dev in the Loris directory.
> >>>>
> >>>> npm run compile
> >>>>
> >>>>     ERROR in EACCES: permission denied, scandir
> >>>> '/home/lorisadmin/Loris/smarty/templates_c'
> >>>>
> >>>> templates_c is an empty directory.
> >>>>
> >>>> Any suggestions, please let me know.
> >>>> Best regards,
> >>>> Cartik Sharma
> >>>> about.me/sharmacartik
> >>>> _______________________________________________
> >>>> Loris-dev mailing list
> >>>> Loris-dev at bic.mni.mcgill.ca
> >>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
> >>>
> >>> _______________________________________________
> >>> Loris-dev mailing list
> >>> Loris-dev at bic.mni.mcgill.ca
> >>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
> >>
> >>
> >>
> >> --
> >> Cartik Sharma
> >> about.me/sharmacartik
> >> _______________________________________________
> >> Loris-dev mailing list
> >> Loris-dev at bic.mni.mcgill.ca
> >> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
>
>
> --
> Cartik Sharma
> about.me/sharmacartik
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
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From cartik.sharma at gmail.com  Mon Aug 16 14:39:36 2021
From: cartik.sharma at gmail.com (Cartik Sharma)
Date: Mon, 16 Aug 2021 14:39:36 -0400
Subject: [Loris-dev] (no subject)
In-Reply-To: <YQBPR0101MB455535CCAD9D3354EC296F44CFFD9@YQBPR0101MB4555.CANPRD01.PROD.OUTLOOK.COM>
References: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>
 <CAF6xo=PTmOS=G=OfA9W+S_oHfqWdckm4rFius0v2pM+o_jsQ4g@mail.gmail.com>
 <CANP4vsik0wT1J0TKu9GmBBx6OoaQqcYP-0QGv6g_kcFPaw613Q@mail.gmail.com>
 <CAN9cDwGX1NOWVhbDqDSnHXu0JFten9YXgthO7yCyf6GFsAGfzQ@mail.gmail.com>
 <CANP4vshaeBuKo93c8OH+S99GSe68YedDMXJVJFreyEpCDsQ7aQ@mail.gmail.com>
 <YQBPR0101MB455535CCAD9D3354EC296F44CFFD9@YQBPR0101MB4555.CANPRD01.PROD.OUTLOOK.COM>
Message-ID: <CANP4vsh0MVm+DhSgu7S2OnOGjEXNWJPXAwaZhjNOwXYkg6BH_w@mail.gmail.com>

I've done a chmod ugo+rwx for all files in the Loris directory.

Best regards,
Cartik

On Mon, Aug 16, 2021 at 2:11 PM Melanie Legault, Mrs <
melanie.legault2 at mcgill.ca> wrote:

> What is the ownership and permission of the /path/to/Loris/ directory and
> subdir?
>
> Apache need to be able to read everything and write to the ../project and
> ../smarty directory.
> Usually, the group ownership is set to apache (httpd or apache depending
> on OS)
> with read permission for the group everywhere and write permission on the
> 2 dir above.
>
> M?lanie
>
> ------------------------------
> *From:* loris-dev-bounces at bic.mni.mcgill.ca <
> loris-dev-bounces at bic.mni.mcgill.ca> on behalf of Cartik Sharma <
> cartik.sharma at gmail.com>
> *Sent:* August 16, 2021 13:45
> *To:* Dave MacFarlane <dave.macfarlane at mcin.ca>
> *Cc:* loris-dev <loris-dev at bic.mni.mcgill.ca>; Samir Das <
> samirdas99 at gmail.com>
> *Subject:* Re: [Loris-dev] (no subject)
>
> I'm using ssh csharma at login.acelab.ca through my ldap account to
> access cobra-lab-dev.loris.ca
>
> Best regards,
> Cartik
>
> On Mon, Aug 16, 2021 at 1:43 PM Dave MacFarlane <dave.macfarlane at mcin.ca>
> wrote:
> >
> > Hi Cartik,
> >
> > I'm not seeing anywhere in the code for installdb.php that can return a
> 403 error. Are you sure there's not some kind of proxy/firewall/VPN/etc in
> front of your LORIS instance preventing you from accessing it?
> >
> > - Dave
> >
> > On Mon, Aug 16, 2021 at 1:30 PM Cartik Sharma <cartik.sharma at gmail.com>
> wrote:
> >>
> >> hi Samir,
> >>
> >> This seems to work.
> >>
> >> However when I try to launch 132.206.37.11/installdb.php
> >>
> >> I get an error: 403 access denied.
> >>
> >> Best regards,
> >> Cartik
> >>
> >> On Mon, Aug 16, 2021 at 12:08 PM Samir Das <samirdas99 at gmail.com>
> wrote:
> >>>
> >>> Hi Cartik,
> >>>
> >>> This is one directory that needs to be there to write temporary
> template files to, and you just need to change the permissions to 775 (or
> maybe even 777) and all should work.
> >>>
> >>> Best,
> >>>
> >>> Samir Das
> >>>
> >>> On Mon, Aug 16, 2021 at 12:05 PM Cartik Sharma <
> cartik.sharma at gmail.com> wrote:
> >>>>
> >>>> Dear all,
> >>>>
> >>>> I'm getting this error while running make dev in the Loris directory.
> >>>>
> >>>> npm run compile
> >>>>
> >>>>     ERROR in EACCES: permission denied, scandir
> >>>> '/home/lorisadmin/Loris/smarty/templates_c'
> >>>>
> >>>> templates_c is an empty directory.
> >>>>
> >>>> Any suggestions, please let me know.
> >>>> Best regards,
> >>>> Cartik Sharma
> >>>> about.me/sharmacartik
> >>>> _______________________________________________
> >>>> Loris-dev mailing list
> >>>> Loris-dev at bic.mni.mcgill.ca
> >>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
> >>>
> >>> _______________________________________________
> >>> Loris-dev mailing list
> >>> Loris-dev at bic.mni.mcgill.ca
> >>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
> >>
> >>
> >>
> >> --
> >> Cartik Sharma
> >> about.me/sharmacartik
> >> _______________________________________________
> >> Loris-dev mailing list
> >> Loris-dev at bic.mni.mcgill.ca
> >> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
>
>
> --
> Cartik Sharma
> about.me/sharmacartik
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>


-- 
<https://about.me/sharmacartik?promo=email_sig&utm_source=product&utm_medium=email_sig&utm_campaign=gmail_api>
Cartik Sharma
about.me/sharmacartik
<https://about.me/sharmacartik?promo=email_sig&utm_source=product&utm_medium=email_sig&utm_campaign=gmail_api>
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From AMORALESPINZON at BWH.HARVARD.EDU  Mon Aug 16 15:51:05 2021
From: AMORALESPINZON at BWH.HARVARD.EDU (Morales Pinzon, Alfredo)
Date: Mon, 16 Aug 2021 19:51:05 +0000
Subject: [Loris-dev] BIDS - AcquisitionType
Message-ID: <EC983D83-651E-4A10-B650-A25961C117D7@bwh.harvard.edu>

Dear LorisDev team,

I have a question regarding the AcquisitionType assigned to images imported using the BIDS functionality: how do you assign the AcquisitionType?

For some cases it looks good, but some it doesn?t match the ?acq? label in BIDS:

Example of correct acquisition type:
===
        {
            "OutputType": "native",
            "Filename": "sub-BGK104001_ses-month36_run-2_T1w.nii.gz",
            "AcquisitionType": "T1w"
        }
===

Example of wrong acquisition type, in this case it should be MT0.
===
        {
            "OutputType": "native",
            "Filename": "sub-BGK104001_ses-month36_acq-MT0_run-1_T2w.nii.gz",
            "AcquisitionType": "t2w"
        },
===

Would it be possible to modify the way the acquisition types are being assigned so that it takes the ?acq? label from BIDS?

Thank you for your help.

Best regards,
Alfredo.
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Please note that this e-mail is not secure (encrypted).  If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately.  Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. 
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From cecile.madjar at mcin.ca  Tue Aug 17 09:04:20 2021
From: cecile.madjar at mcin.ca (Cecile Madjar)
Date: Tue, 17 Aug 2021 09:04:20 -0400
Subject: [Loris-dev] BIDS - AcquisitionType
In-Reply-To: <EC983D83-651E-4A10-B650-A25961C117D7@bwh.harvard.edu>
References: <EC983D83-651E-4A10-B650-A25961C117D7@bwh.harvard.edu>
Message-ID: <CAMkiY3dSF___LcDQj=fGua9wr9QgCUsmDKb6C6pBQkSQ-cbUEw@mail.gmail.com>

Hi Alfredo,

I just verified the BIDS specification. The modality (aka acquisition type)
is the last component of the file name, so in the case of the MT0 T2w, the
t2w acquisition type is correct. What is stored behind the acq- string are
actually acquisition parameters not the acquisition type per se.

If you really want to add the acq prefix to the scan type, you could always
modify this line of code
<https://github.com/aces/Loris-MRI/blob/15df82251e8011b263effebbf95104737bfc97b4/python/lib/mri.py#L282>
so
that it also takes the acq prefix when looking for a scan type?

C?cile

On Mon, Aug 16, 2021 at 3:51 PM Morales Pinzon, Alfredo <
AMORALESPINZON at bwh.harvard.edu> wrote:

> Dear LorisDev team,
>
> I have a question regarding the AcquisitionType assigned to images
> imported using the BIDS functionality: how do you assign the
> AcquisitionType?
>
> For some cases it looks good, but some it doesn?t match the ?acq? label in
> BIDS:
>
> Example of correct acquisition type:
> ===
>         {
>             "OutputType": "native",
>             "Filename": "sub-BGK104001_ses-month36_run-2_T1w.nii.gz",
>             "AcquisitionType": "T1w"
>         }
> ===
>
> Example of wrong acquisition type, in this case it should be MT0.
> ===
>         {
>             "OutputType": "native",
>             "Filename": "sub-BGK104001_ses-month36_acq-MT0
> _run-1_T2w.nii.gz",
>             "AcquisitionType": "t2w"
>         },
> ===
>
> Would it be possible to modify the way the acquisition types are being
> assigned so that it takes the ?acq? label from BIDS?
>
> Thank you for your help.
>
> Best regards,
> Alfredo.
> The information in this e-mail is intended only for the person to whom it
> is addressed. If you believe this e-mail was sent to you in error and the
> e-mail contains patient information, please contact the Mass General
> Brigham Compliance HelpLine at
> http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent
> to you in error but does not contain patient information, please contact
> the sender and properly dispose of the e-mail.
>
> Please note that this e-mail is not secure (encrypted).  If you do not
> wish to continue communication over unencrypted e-mail, please notify the
> sender of this message immediately.  Continuing to send or respond to
> e-mail after receiving this message means you understand and accept this
> risk and wish to continue to communicate over unencrypted e-mail.
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
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From AMORALESPINZON at BWH.HARVARD.EDU  Tue Aug 17 12:38:18 2021
From: AMORALESPINZON at BWH.HARVARD.EDU (Morales Pinzon, Alfredo)
Date: Tue, 17 Aug 2021 16:38:18 +0000
Subject: [Loris-dev] BIDS - AcquisitionType
In-Reply-To: <CAMkiY3dSF___LcDQj=fGua9wr9QgCUsmDKb6C6pBQkSQ-cbUEw@mail.gmail.com>
References: <EC983D83-651E-4A10-B650-A25961C117D7@bwh.harvard.edu>
 <CAMkiY3dSF___LcDQj=fGua9wr9QgCUsmDKb6C6pBQkSQ-cbUEw@mail.gmail.com>
Message-ID: <D56AF84D-230B-4C98-BE49-C1A3591E1EED@bwh.harvard.edu>

Hi C?cile,

Thank you for the explanation. I?ll check with the team if this changes is required for our project.

Best,
Alfredo.

On Aug 17, 2021, at 9:04 AM, Cecile Madjar <cecile.madjar at mcin.ca<mailto:cecile.madjar at mcin.ca>> wrote:


        External Email - Use Caution

Hi Alfredo,

I just verified the BIDS specification. The modality (aka acquisition type) is the last component of the file name, so in the case of the MT0 T2w, the t2w acquisition type is correct. What is stored behind the acq- string are actually acquisition parameters not the acquisition type per se.

If you really want to add the acq prefix to the scan type, you could always modify this line of code<https://secure-web.cisco.com/1_Mi0tGkwGZlsC_57j1f44QdA8RR5bpfcRJl1P5pDWTBiInJ_GWqb9syT49tK6o51AxJLJtwBNmpzBN3bQhvE_pjfHOiuYOKPeT3YUubJi_JXX731ZWY79KebVrJdBoyzREnIeb9c1T9JHLg_2TrmPxVCnrloRbAWzDJJshhsrR3Q3IJm8IjN2QbVOjsBvie5QlmMnBVBjCc1qW82vDI5bEqNVxXJ9yLNDaiAmzhZUeSHgEN_JMBHFSCU9zlB4g--byo7cedmGj5Xiri8LWMMSQ/https%3A%2F%2Fgithub.com%2Faces%2FLoris-MRI%2Fblob%2F15df82251e8011b263effebbf95104737bfc97b4%2Fpython%2Flib%2Fmri.py%23L282> so that it also takes the acq prefix when looking for a scan type?

C?cile

On Mon, Aug 16, 2021 at 3:51 PM Morales Pinzon, Alfredo <AMORALESPINZON at bwh.harvard.edu<mailto:AMORALESPINZON at bwh.harvard.edu>> wrote:
Dear LorisDev team,

I have a question regarding the AcquisitionType assigned to images imported using the BIDS functionality: how do you assign the AcquisitionType?

For some cases it looks good, but some it doesn?t match the ?acq? label in BIDS:

Example of correct acquisition type:
===
        {
            "OutputType": "native",
            "Filename": "sub-BGK104001_ses-month36_run-2_T1w.nii.gz",
            "AcquisitionType": "T1w"
        }
===

Example of wrong acquisition type, in this case it should be MT0.
===
        {
            "OutputType": "native",
            "Filename": "sub-BGK104001_ses-month36_acq-MT0_run-1_T2w.nii.gz",
            "AcquisitionType": "t2w"
        },
===

Would it be possible to modify the way the acquisition types are being assigned so that it takes the ?acq? label from BIDS?

Thank you for your help.

Best regards,
Alfredo.
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline<http://secure-web.cisco.com/1ig3dr6i1WdAs8_-Q_MeK7GXwa0dgT1TgKI1JS7MC0k4yUeF62G6kVevDIHZj5n8tYT0kmV7nj6Fy6sEMEe-xDkf6WhZtm0M-v0uUlyhiKd_DcQ1aSPrfn2jxfJIreAitqwR42XMZb84w7G5WECzE46VWrQ3SZQgrrNHlOq19WKP-mKl5SKE-kGJwNUp4d3l-NeVnWGOTeEoLAx7yXW4HO4FcWICnHaw7zpvritbMeXJqEIaabeQmg8ZEyf_niv71lNvwche53TaBWI6any_S-g/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

Please note that this e-mail is not secure (encrypted).  If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately.  Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
_______________________________________________
Loris-dev mailing list
Loris-dev at bic.mni.mcgill.ca<mailto:Loris-dev at bic.mni.mcgill.ca>
https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev<https://secure-web.cisco.com/1d3CFTBToT4j_It30C0sMIZMcTjPqg9RYBFR977oo5ohdasD5Q6U_0ZthyISkUY7Scl8QHwLUGl1JPlpSq6nGt24dMn4qVx8wLxa2UEgaCQgBVAFsdSgusVbLZfj66xn8uFJW_6Qn157m_S9eVZtPrTxUxdhnqC-Yle4xue7mwU5VhzucMFWdxp7uxzLYfwjG35JojFFEy8Aa2x9j2hSO3E-NPuUnrYeqQtR4GFLMRpTbp_8xv4S_0T1hH6fYlqR6JyiOCvcB7AV9LbjIr5GAkQ/https%3A%2F%2Fmailman.bic.mni.mcgill.ca%2Fmailman%2Flistinfo%2Floris-dev>

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Please note that this e-mail is not secure (encrypted).  If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately.  Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. 
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From cartik.sharma at gmail.com  Tue Aug 17 14:07:02 2021
From: cartik.sharma at gmail.com (Cartik Sharma)
Date: Tue, 17 Aug 2021 14:07:02 -0400
Subject: [Loris-dev] (no subject)
In-Reply-To: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>
References: <CANP4vsh0R801GS8YvDkm_NMFsBH3ozarwhYPMk3CbAF_YHDcmg@mail.gmail.com>
Message-ID: <CANP4vsgwKTwnMTG_Giq-YJdTDr1kActnnTySKRL8r24iDoDGFw@mail.gmail.com>

Hi,
>From the documentation posted on https://github.com/cartiksharma286/Loris
<loris-url>/installdb.php is not working as mentioned on the Loris machine.

132.206.37.11/installdb.php

Please let me know what command launches loris on the system in a browser
context, to launch loris
after make works fine.

Best regards,
Cartik

On Mon, Aug 16, 2021 at 12:04 PM Cartik Sharma <cartik.sharma at gmail.com>
wrote:

> Dear all,
>
> I'm getting this error while running make dev in the Loris directory.
>
> npm run compile
>
>     ERROR in EACCES: permission denied, scandir
> '/home/lorisadmin/Loris/smarty/templates_c'
>
> templates_c is an empty directory.
>
> Any suggestions, please let me know.
> Best regards,
> Cartik Sharma
> about.me/sharmacartik
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>


-- 
<https://about.me/sharmacartik?promo=email_sig&utm_source=product&utm_medium=email_sig&utm_campaign=gmail_api>
Cartik Sharma
about.me/sharmacartik
<https://about.me/sharmacartik?promo=email_sig&utm_source=product&utm_medium=email_sig&utm_campaign=gmail_api>
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From AMORALESPINZON at BWH.HARVARD.EDU  Mon Aug 30 10:57:08 2021
From: AMORALESPINZON at BWH.HARVARD.EDU (Morales Pinzon, Alfredo)
Date: Mon, 30 Aug 2021 14:57:08 +0000
Subject: [Loris-dev] Change visit label
Message-ID: <2CDCDBCB-0889-4D87-85E9-E0EF47720B48@bwh.harvard.edu>

Dear LorisDev Team,

By mistake I added images to a visit with label ?screening2? instead of to the visit with label ?screening?. Is it possible to change the visit label or I need to remove the visit and upload the images to the proper visit.

Thank you in advance.

Regards,
Alfredo.
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Please note that this e-mail is not secure (encrypted).  If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately.  Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. 


From cartik.sharma at gmail.com  Mon Aug 30 12:54:34 2021
From: cartik.sharma at gmail.com (Cartik Sharma)
Date: Mon, 30 Aug 2021 12:54:34 -0400
Subject: [Loris-dev] data query tool
Message-ID: <CANP4vsgHt80E-1k1e3N2ZrJoxoKZtb6ruY_boiB=1=Yodqfgnw@mail.gmail.com>

Dear All,

 I'm testing Loris and exploring its features.

Loris has a problem, when you try to click on data query tool, nothing happens.
Hopefully this can be fixed.

Best regards,
Cartik Sharma
about.me/sharmacartik

From rogers at bic.mni.mcgill.ca  Mon Aug 30 14:14:59 2021
From: rogers at bic.mni.mcgill.ca (Christine Rogers)
Date: Mon, 30 Aug 2021 14:14:59 -0400
Subject: [Loris-dev] data query tool
In-Reply-To: <CANP4vsgHt80E-1k1e3N2ZrJoxoKZtb6ruY_boiB=1=Yodqfgnw@mail.gmail.com>
References: <CANP4vsgHt80E-1k1e3N2ZrJoxoKZtb6ruY_boiB=1=Yodqfgnw@mail.gmail.com>
Message-ID: <CALbt7NDdU=6=B7pXJ+hn2HenNShTP79-wOmHTrdGa0yrkA-rVA@mail.gmail.com>

Hi Cartik,
Could you first clarify for us -- Did you first follow the configuration
notes to set up this module ?

 They are contained in the Readme in the module directory (as for all
modules)
e.g. on the 23 branch
https://github.com/aces/Loris/tree/23.0-release/modules/dataquery

Also, when sending error reports, it will help us answer faster to know the
specific version you've installed as well as the last few lines in your
Apache error log -- Thanks for mentioning these if errors persist after you
set up the module.

Thanks,
Christine


On Mon, Aug 30, 2021 at 12:55 PM Cartik Sharma <cartik.sharma at gmail.com>
wrote:

> Dear All,
>
>  I'm testing Loris and exploring its features.
>
> Loris has a problem, when you try to click on data query tool, nothing
> happens.
> Hopefully this can be fixed.
>
> Best regards,
> Cartik Sharma
> about.me/sharmacartik
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>


-- 
Research Project Officer
christine.rogers at mcgill.ca
McGill Centre for Integrative Neuroscience | MCIN.ca
Montreal Neurological Institute-Hospital
McGill University | Montreal | Canada
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From cartik.sharma at gmail.com  Mon Aug 30 14:38:27 2021
From: cartik.sharma at gmail.com (Cartik Sharma)
Date: Mon, 30 Aug 2021 14:38:27 -0400
Subject: [Loris-dev] data query tool
In-Reply-To: <CALbt7NDdU=6=B7pXJ+hn2HenNShTP79-wOmHTrdGa0yrkA-rVA@mail.gmail.com>
References: <CANP4vsgHt80E-1k1e3N2ZrJoxoKZtb6ruY_boiB=1=Yodqfgnw@mail.gmail.com>
 <CALbt7NDdU=6=B7pXJ+hn2HenNShTP79-wOmHTrdGa0yrkA-rVA@mail.gmail.com>
Message-ID: <CANP4vsjKTwztKH0Y9wp3fytDuLaQU2xCEnwSVM3g4241Dxmtcg@mail.gmail.com>

Thanks, I'll follow the configuration notes for Loris.

Best regards,
Cartik

On Mon, Aug 30, 2021 at 2:15 PM Christine Rogers <rogers at bic.mni.mcgill.ca>
wrote:

> Hi Cartik,
> Could you first clarify for us -- Did you first follow the configuration
> notes to set up this module ?
>
>  They are contained in the Readme in the module directory (as for all
> modules)
> e.g. on the 23 branch
> https://github.com/aces/Loris/tree/23.0-release/modules/dataquery
>
> Also, when sending error reports, it will help us answer faster to know
> the specific version you've installed as well as the last few lines in your
> Apache error log -- Thanks for mentioning these if errors persist after you
> set up the module.
>
> Thanks,
> Christine
>
>
> On Mon, Aug 30, 2021 at 12:55 PM Cartik Sharma <cartik.sharma at gmail.com>
> wrote:
>
>> Dear All,
>>
>>  I'm testing Loris and exploring its features.
>>
>> Loris has a problem, when you try to click on data query tool, nothing
>> happens.
>> Hopefully this can be fixed.
>>
>> Best regards,
>> Cartik Sharma
>> about.me/sharmacartik
>> _______________________________________________
>> Loris-dev mailing list
>> Loris-dev at bic.mni.mcgill.ca
>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>
>
>
> --
> Research Project Officer
> christine.rogers at mcgill.ca
> McGill Centre for Integrative Neuroscience | MCIN.ca
> Montreal Neurological Institute-Hospital
> McGill University | Montreal | Canada
>


-- 
<https://about.me/sharmacartik?promo=email_sig&utm_source=product&utm_medium=email_sig&utm_campaign=gmail_api>
Cartik Sharma
about.me/sharmacartik
<https://about.me/sharmacartik?promo=email_sig&utm_source=product&utm_medium=email_sig&utm_campaign=gmail_api>
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From nicolasbrossard.mni at gmail.com  Tue Aug 31 15:00:35 2021
From: nicolasbrossard.mni at gmail.com (Nicolas Brossard)
Date: Tue, 31 Aug 2021 15:00:35 -0400
Subject: [Loris-dev] Change visit label
In-Reply-To: <2CDCDBCB-0889-4D87-85E9-E0EF47720B48@bwh.harvard.edu>
References: <2CDCDBCB-0889-4D87-85E9-E0EF47720B48@bwh.harvard.edu>
Message-ID: <CAHaEUvpetYcGx2cCnmNqX=m+dVSc5XbqdOX9u1ZXFTY9_ko=6Q@mail.gmail.com>

Hi Alfredo,

I need to ask you a few questions in order to provide the best solution:

- How many images are we talking about?
- Is there behavioural data in the database for visit 'screening2'
- You are supposed to set the patient name DICOM header of all the images
you inserted to <PSCID>_<CandID>_<Visit_label>. When you did that, did you
use the visit label 'screening' or 'screening2'?

I'll suggest something based on your answers.


Thanks!
Nicolas


On Mon, Aug 30, 2021 at 10:57 AM Morales Pinzon, Alfredo <
AMORALESPINZON at bwh.harvard.edu> wrote:

> Dear LorisDev Team,
>
> By mistake I added images to a visit with label ?screening2? instead of to
> the visit with label ?screening?. Is it possible to change the visit label
> or I need to remove the visit and upload the images to the proper visit.
>
> Thank you in advance.
>
> Regards,
> Alfredo.
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