[Loris-dev] Import mri - scripts

[Sotirios Nikoloutsopoulos]

/data/loris/bin/mri/dicom-archive/.loris_mri/database_config.py is
populated correctly except its port is  'port'    : ''. Also i have tested
that i can connect to MySQL with lorisuser.

I executed the script again, because the only error i had previously was
that the /data/incoming folder didn't exist and there are no errors
reported back except of warnings <<mysql: [Warning] Using a password on the
command line interface can be insecure>>.


Στις Τετ, 4 Σεπ 2019 στις 4:53 μ.μ., ο/η Christine Rogers, Ms. <
christine.rogers at mcgill.ca> έγραψε:

> Hi Sotirios,
>
> It's possible -- if the script was unable to connect to the database
> during its execution (e.g. typo in the password), that would explain the
> underpopulated Image path and Loris-MRI code path you saw in the Config
> module.
> It's hard to tell without seeing the output from your script run -- Did
> you see a sign of any such error?
> The Config fields are populated by the imaging_install.sh script (starting
> at line 222
> <https://github.com/aces/Loris-MRI/blob/21.0-dev/imaging_install.sh#L222>)
>
> For example, check if the database connection information was populated
> accurately in $mridir/dicom-archive/.loris_mri/database_config.py
>
> Best,
> Christine
>
>
>
> On Wed, Sep 4, 2019 at 9:34 AM Sotirios Nikoloutsopoulos <
> sotirisnik at gmail.com> wrote:
>
>> Hi Christine,
>>
>> If you are referring to the imaging_install.sh here is an image with the
>> configurations i typed. Maybe the problem is somewhere at the last part
>> which asks to configure as much as possible automatically?
>>
>> Thanks
>>
>>
>> Στις Τετ, 4 Σεπ 2019 στις 4:16 μ.μ., ο/η Christine Rogers, Ms. <
>> christine.rogers at mcgill.ca> έγραψε:
>>
>>> Hi Sotirios,
>>>
>>> Glad to hear your LORIS core install is up and working and all the
>>> front-end pages are loading.
>>>
>>> > lorisadmin at loris-VirtualBox:/var/www/loris$ chmod 775 project
>>> > and the web interface worked.
>>>
>>> Yes, it's important that project/ have 775 permissions and that
>>> lorisadmin be part of the sudoers group, per step 1 in the install
>>> Readme <https://github.com/aces/Loris#install-steps>.
>>>
>>> > As for the Paths, LORIS-MRI code and Image should change LORIS to
>>> loris, right?
>>>
>>> These imaging paths will be updated during your imaging installation
>>> <https://github.com/aces/Loris/wiki/Setup> by an automated script --
>>> you do not need to set them manually via the Config module.
>>> Please continue to follow the Setup Guide
>>> <https://github.com/aces/Loris/wiki/Setup> for detailed steps to follow.
>>>
>>> Best,
>>> Christine
>>>
>>>
>>>
>>>
>>> On Wed, Sep 4, 2019 at 8:05 AM Sotirios Nikoloutsopoulos <
>>> sotirisnik at gmail.com> wrote:
>>>
>>>> As for the Paths, LORIS-MRI code and Image should change LORIS to
>>>> loris, right?
>>>>
>>>> [image: image.png]
>>>>
>>>>
>>>> Στις Τετ, 4 Σεπ 2019 στις 2:28 μ.μ., ο/η Sotirios Nikoloutsopoulos <
>>>> sotirisnik at gmail.com> έγραψε:
>>>>
>>>>> Hi,
>>>>>
>>>>> i used
>>>>>
>>>>> curl -sL https://deb.nodesource.com/setup_8.x | sudo -E bash -
>>>>> sudo apt-get install -y nodejs
>>>>>
>>>>>
>>>>> you had suggested in the past, make worked and now i can see all the
>>>>> contents in the web-interface, but i don't need make install?
>>>>>
>>>>> Thanks
>>>>>
>>>> _______________________________________________
>>>> Loris-dev mailing list
>>>> Loris-dev at bic.mni.mcgill.ca
>>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>>>
>>>
>>>
>>> --
>>>
>>> christine.rogers at mcgill.ca
>>> McGill Centre for Integrative Neuroscience | MCIN.ca
>>> Montreal Neurological Institute
>>> McGill University | Montreal | Canada
>>>
>> _______________________________________________
>> Loris-dev mailing list
>> Loris-dev at bic.mni.mcgill.ca
>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>
>
>
> --
>
> christine.rogers at mcgill.ca
> McGill Centre for Integrative Neuroscience | MCIN.ca
> Montreal Neurological Institute
> McGill University | Montreal | Canada
>
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