[Loris-dev] Import mri - scripts

Tue Sep 3 09:20:58 EDT 2019

It seems that the links's point is correct. And yes i only runned composer
not the makefile.

lorisadmin at loris-VirtualBox:/var/www/loris/htdocs$ ls -l
total 116
drwxr-xr-x  2 lorisadmin lorisadmin  4096 Ιούλ 23 20:37 acknowledgements
-rw-r--r--  1 lorisadmin lorisadmin  3217 Ιούλ 23 20:37 AjaxHelper.php
drwxr-xr-x  4 lorisadmin lorisadmin  4096 Ιούλ 23 20:37 api
drwxr-xr-x  5 lorisadmin lorisadmin  4096 Ιούλ 23 20:37 bootstrap
drwxr-xr-x  4 lorisadmin lorisadmin  4096 Ιούλ 23 20:37 css
-rw-r--r--  1 lorisadmin lorisadmin  7730 Ιούλ 23 20:37 direct.css
-rw-r--r--  1 lorisadmin lorisadmin  5361 Ιούλ 23 20:37
feedback_mri_popup.php
lrwxrwxrwx  1 lorisadmin lorisadmin    48 Αύγ  31 02:17 fontawesome ->
./../node_modules/@fortawesome/fontawesome-free/
drwxr-xr-x  2 lorisadmin lorisadmin  4096 Ιούλ 23 20:37 images
-rw-r--r--  1 lorisadmin lorisadmin  2040 Ιούλ 23 20:37 index.php
-rw-r--r--  1 lorisadmin lorisadmin  8311 Ιούλ 23 20:37 installdb.php
drwxr-xr-x 11 lorisadmin lorisadmin  4096 Ιούλ 23 20:37 js
-rw-r--r--  1 lorisadmin lorisadmin 12640 Ιούλ 23 20:37 main.css
-rw-r--r--  1 lorisadmin lorisadmin  9189 Ιούλ 23 20:37 main.php
drwxr-xr-x  3 lorisadmin lorisadmin  4096 Ιούλ 23 20:37 mri
-rw-r--r--  1 lorisadmin lorisadmin  2532 Ιούλ 23 20:37 postdeploy.php
-rw-r--r--  1 lorisadmin lorisadmin  2293 Ιούλ 23 20:37 router.php
-rw-r--r--  1 lorisadmin lorisadmin 12131 Ιούλ 23 20:37 survey.php
drwxr-xr-x  4 lorisadmin lorisadmin  4096 Ιούλ 23 20:37 vendor

Στις Τρί, 3 Σεπ 2019 στις 3:48 μ.μ., ο/η Christine Rogers, Ms. <
christine.rogers at mcgill.ca> έγραψε:

> Hi Sotirios,
> You've got your LORIS up and running, and are running into font library
> issues?  great.
>
> The symlink under htdocs/ for fontawesome is supposed to point to:
> ./../node_modules/@fortawesome/fontawesome-free/
> (see:  https://github.com/aces/Loris/blob/21.0-release/htdocs/fontawesome
>  )
> This sounds like it may be a permissions issue, or with your node modules.
> Can you give us more specifics on the permissions in your htdocs directory
> and if any other links or packages look funny?
>
> You have run composer commands but not the makefile, is that correct?
>
> Note we have an even newer stable release out already:  21.0.1
> <https://github.com/aces/Loris/releases>
>
> Best,
> Christine
>
> On Tue, Sep 3, 2019 at 8:09 AM Sotirios Nikoloutsopoulos <
> sotirisnik at gmail.com> wrote:
>
>> Hi,
>>
>> i didn't remember that config.xml was being created during the execution
>> of installdb.php. Now am i getting white content on the pages only because
>> fontawesome is missing? Was that part of the composer install? because i
>> hadn't such error.
>>
>> Thanks
>>
>> [Tue Sep 03 15:01:35.265016 2019] [core:error] [pid 32545] [client
>> 127.0.0.1:44206] AH00037: Symbolic link not allowed or link target not
>> accessible: /var/www/loris/htdocs/fontawesome, referer: http://localhost/
>> [Tue Sep 03 15:01:43.036540 2019] [core:error] [pid 32674] [client
>> 127.0.0.1:44218] AH00037: Symbolic link not allowed or link target not
>> accessible: /var/www/loris/htdocs/fontawesome, referer:
>> http://localhost/imaging_browser/
>> [Tue Sep 03 15:01:45.528635 2019] [core:error] [pid 405] [client
>> 127.0.0.1:44224] AH00037: Symbolic link not allowed or link target not
>> accessible: /var/www/loris/htdocs/fontawesome, referer:
>> http://localhost/imaging_uploader/
>> [Tue Sep 03 15:01:50.143756 2019] [core:error] [pid 405] [client
>> 127.0.0.1:44224] AH00037: Symbolic link not allowed or link target not
>> accessible: /var/www/loris/htdocs/fontawesome, referer:
>> http://localhost/examiner/
>> [Tue Sep 03 15:01:52.938614 2019] [core:error] [pid 405] [client
>> 127.0.0.1:44224] AH00037: Symbolic link not allowed or link target not
>> accessible: /var/www/loris/htdocs/fontawesome, referer:
>> http://localhost/conflict_resolver/
>> [Tue Sep 03 15:01:57.802263 2019] [core:error] [pid 405] [client
>> 127.0.0.1:44224] AH00037: Symbolic link not allowed or link target not
>> accessible: /var/www/loris/htdocs/fontawesome, referer:
>> http://localhost/imaging_browser/
>> [Tue Sep 03 15:02:00.203105 2019] [core:error] [pid 405] [client
>> 127.0.0.1:44224] AH00037: Symbolic link not allowed or link target not
>> accessible: /var/www/loris/htdocs/fontawesome, referer:
>> http://localhost/dicom_archive/
>> [Tue Sep 03 15:02:03.390223 2019] [core:error] [pid 405] [client
>> 127.0.0.1:44224] AH00037: Symbolic link not allowed or link target not
>> accessible: /var/www/loris/htdocs/fontawesome, referer:
>> http://localhost/imaging_uploader/
>>
>> Στις Δευ, 2 Σεπ 2019 στις 10:16 μ.μ., ο/η Sotirios Nikoloutsopoulos <
>> sotirisnik at gmail.com> έγραψε:
>>
>>> Hi,
>>>
>>> it there a solution for this?
>>> https://github.com/aces/Loris/issues/3313
>>>
>>> I need to meet a deadline about Loris by the end of September.
>>>
>>> Thanks
>>>
>>> Στις Κυρ, 1 Σεπ 2019 στις 10:19 μ.μ., ο/η Sotirios Nikoloutsopoulos <
>>> sotirisnik at gmail.com> έγραψε:
>>>
>>>> Hi,
>>>> based on this link https://www.digitalocean.com/community/tutorials/how-to-install-and-use-composer-on-ubuntu-16-04
>>>>
>>>> i installed composer 1.9 with these following commands.
>>>>
>>>>
>>>> curl -sS https://getcomposer.org/installer -o composer-setup.php
>>>>
>>>> php -r "if (hash_file('SHA384', 'composer-setup.php') === 'a5c698ffe4b8e849a443b120cd5ba38043260d5c4023dbf93e1558871f1f07f58274fc6f4c93bcfd858c6bd0775cd8d1') { echo 'Installer verified'; } else { echo 'Installer corrupt'; unlink('composer-setup.php'); } echo PHP_EOL;"
>>>> sudo php composer-setup.php --install-dir=/usr/local/bin --filename=composer
>>>>
>>>> And afterwards composer install worked and the only warning i got at the end of the installation was
>>>>
>>>> <<phpunit/phpunit suggests installing phpunit/php-invoker (^1.1)
>>>> Package phpunit/phpunit-mock-objects is abandoned, you should avoid using it. No replacement was suggested.
>>>> Package phpunit/dbunit is abandoned, you should avoid using it. No replacement was suggested.>>
>>>>
>>>> And from the loris-error.log
>>>>
>>>> [Sun Sep 01 22:18:03.479956 2019] [php7:error] [pid 15737] [client 127.0.0.1:43560] PHP Fatal error:  Uncaught ConfigurationException: Config file config.xml does not exist in the defined locations. in /var/www/loris/php/libraries/NDB_Config.class.inc:139\nStack trace:\n#0 /var/www/loris/php/libraries/NDB_Config.class.inc(66): NDB_Config->configFilePath()\n#1 /var/www/loris/php/libraries/NDB_Factory.class.inc(118): NDB_Config::singleton(NULL)\n#2 /var/www/loris/php/libraries/NDB_Client.class.inc(54): NDB_Factory->config(NULL)\n#3 /var/www/loris/htdocs/index.php(27): NDB_Client->initialize()\n#4 {main}\n  thrown in /var/www/loris/php/libraries/NDB_Config.class.inc on line 139
>>>>
>>>> _______________________________________________
>> Loris-dev mailing list
>> Loris-dev at bic.mni.mcgill.ca
>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>
>
>
> --
>
> christine.rogers at mcgill.ca
> McGill Centre for Integrative Neuroscience | MCIN.ca
> Montreal Neurological Institute
> McGill University | Montreal | Canada
>
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