[Loris-dev] Error dcm2mnc: UNKNOWN DICOM TRANSFER SYNTAX
Morales Pinzon, Alfredo
AMORALESPINZON at bwh.harvard.edu
Mon Nov 25 12:46:53 EST 2019
Dear LorisDev team,
I am having the following error when converting dcm2mnc:
----------------------------------------------------------------------------
$ dcm2mnc -verbose 094901-00003-Dicom-pdw/ .
Expanding directory '094901-00003-Dicom-pdw/'
Checking file types...
File 094901-00003-Dicom-pdw/0000100012.dcm appears to be DICOM (CD/Export).
UNKNOWN DICOM TRANSFER SYNTAX: 1.2.840.10008.1.2.4.57
----------------------------------------------------------------------------
Do you know why this might be happening? You may find the dcmdump of one dicom file at the end of this email.
Thank you in advance.
Alfredo.
----------------------------------------------------------------------------
# Dicom-File-Format
# Dicom-Meta-Information-Header
# Used TransferSyntax: Little Endian Explicit
(0002,0000) UL 202 # 4, 1 FileMetaInformationGroupLength
(0002,0001) OB 00\01 # 2, 1 FileMetaInformationVersion
(0002,0002) UI =MRImageStorage # 26, 1 MediaStorageSOPClassUID
(0002,0003) UI [1.2.840.113619.2.244.3596.11861676.21355.1354711179.590] # 56, 1 MediaStorageSOPInstanceUID
(0002,0010) UI =JPEGLossless:Non-hierarchical:Process14 # 22, 1 TransferSyntaxUID
(0002,0012) UI [1.2.276.0.7230010.3.0.3.6.1] # 28, 1 ImplementationClassUID
(0002,0013) SH [OFFIS_DCMTK_361] # 16, 1 ImplementationVersionName
# Dicom-Data-Set
# Used TransferSyntax: JPEG Lossless, Non-hierarchical, Process 14
(0008,0005) CS [ISO_IR 100] # 10, 1 SpecificCharacterSet
(0008,0008) CS [ORIGINAL\PRIMARY\OTHER] # 22, 3 ImageType
(0008,0016) UI =MRImageStorage # 26, 1 SOPClassUID
(0008,0018) UI [1.2.840.113619.2.244.3596.11861676.21355.1354711179.590] # 56, 1 SOPInstanceUID
(0008,0020) DA [20000101] # 8, 1 StudyDate
(0008,0021) DA [20000101] # 8, 1 SeriesDate
(0008,0022) DA [20000101] # 8, 1 AcquisitionDate
(0008,0030) TM [094647] # 6, 1 StudyTime
(0008,0031) TM [094901] # 6, 1 SeriesTime
(0008,0032) TM [094901] # 6, 1 AcquisitionTime
(0008,0033) TM [094901] # 6, 1 ContentTime
(0008,0060) CS [MR] # 2, 1 Modality
(0008,0070) LO [AAABBBCCC] # 18, 1 Manufacturer
(0008,0082) SQ (Sequence with explicit length #=0) # 0, 1 InstitutionCodeSequence
(fffe,e0dd) na (SequenceDelimitationItem for re-encod.) # 0, 0 SequenceDelimitationItem
(0008,0104) LO [Anonymized] # 10, 1 CodeMeaning
(0008,1032) SQ (Sequence with explicit length #=0) # 0, 1 ProcedureCodeSequence
(fffe,e0dd) na (SequenceDelimitationItem for re-encod.) # 0, 0 SequenceDelimitationItem
(0008,103e) LO [pdw] # 4, 1 SeriesDescription
(0008,1090) LO [Signa HDxt] # 10, 1 ManufacturerModelName
(0008,1110) SQ (Sequence with explicit length #=1) # 104, 1 ReferencedStudySequence
(fffe,e000) na (Item with explicit length #=2) # 96, 1 Item
(0008,1150) UI =RETIRED_DetachedStudyManagementSOPClass # 24, 1 ReferencedSOPClassUID
(0008,1155) UI [1.2.840.113619.2.244.3596.11861676.21950.1354710592.341] # 56, 1 ReferencedSOPInstanceUID
(fffe,e00d) na (ItemDelimitationItem for re-encoding) # 0, 0 ItemDelimitationItem
(fffe,e0dd) na (SequenceDelimitationItem for re-encod.) # 0, 0 SequenceDelimitationItem
(0008,1111) SQ (Sequence with explicit length #=1) # 104, 1 ReferencedPerformedProcedureStepSequence
(fffe,e000) na (Item with explicit length #=2) # 96, 1 Item
(0008,1150) UI =ModalityPerformedProcedureStepSOPClass # 24, 1 ReferencedSOPClassUID
(0008,1155) UI [1.2.840.113619.2.244.3596.11861676.21950.1354710592.340] # 56, 1 ReferencedSOPInstanceUID
(fffe,e00d) na (ItemDelimitationItem for re-encoding) # 0, 0 ItemDelimitationItem
(fffe,e0dd) na (SequenceDelimitationItem for re-encod.) # 0, 0 SequenceDelimitationItem
(0008,1140) SQ (Sequence with explicit length #=3) # 318, 1 ReferencedImageSequence
(fffe,e000) na (Item with explicit length #=2) # 98, 1 Item
(0008,1150) UI =MRImageStorage # 26, 1 ReferencedSOPClassUID
(0008,1155) UI [1.2.840.113619.2.244.3596.11861676.21355.1354711179.285] # 56, 1 ReferencedSOPInstanceUID
(fffe,e00d) na (ItemDelimitationItem for re-encoding) # 0, 0 ItemDelimitationItem
(fffe,e000) na (Item with explicit length #=2) # 98, 1 Item
(0008,1150) UI =MRImageStorage # 26, 1 ReferencedSOPClassUID
(0008,1155) UI [1.2.840.113619.2.244.3596.11861676.21355.1354711179.286] # 56, 1 ReferencedSOPInstanceUID
(fffe,e00d) na (ItemDelimitationItem for re-encoding) # 0, 0 ItemDelimitationItem
(fffe,e000) na (Item with explicit length #=2) # 98, 1 Item
(0008,1150) UI =MRImageStorage # 26, 1 ReferencedSOPClassUID
(0008,1155) UI [1.2.840.113619.2.244.3596.11861676.21355.1354711179.287] # 56, 1 ReferencedSOPInstanceUID
(fffe,e00d) na (ItemDelimitationItem for re-encoding) # 0, 0 ItemDelimitationItem
(fffe,e0dd) na (SequenceDelimitationItem for re-encod.) # 0, 0 SequenceDelimitationItem
(0010,0010) PN [AAABBBCCC] # 24, 1 PatientName
(0010,0020) LO [11111] # 6, 1 PatientID
(0010,0021) LO [Anonymized] # 10, 1 IssuerOfPatientID
(0010,0030) DA [19000101] # 8, 1 PatientBirthDate
(0010,0040) CS [Anonymized] # 10, 1 PatientSex
(0010,1010) AS [Anonymized] # 10, 1 PatientAge
(0010,1030) DS [10] # 2, 1 PatientWeight
(0010,2150) LO [Anonymized] # 10, 1 CountryOfResidence
(0010,2152) LO [Anonymized] # 10, 1 RegionOfResidence
(0012,0050) LO [AAABBBCCC] # 8, 1 ClinicalTrialTimePointID
(0012,0062) CS [Yes] # 4, 1 PatientIdentityRemoved
(0012,0063) LO [Genentech] # 10, 1 DeidentificationMethod
(0018,0020) CS [SE] # 2, 1 ScanningSequence
(0018,0021) CS [SK] # 2, 1 SequenceVariant
(0018,0022) CS [FAST_GEMS\EDR_GEMS\TRF_GEMS] # 28, 3 ScanOptions
(0018,0023) CS [2D] # 2, 1 MRAcquisitionType
(0018,0025) CS [N] # 2, 1 AngioFlag
(0018,0050) DS [3] # 2, 1 SliceThickness
(0018,0080) DS [2900] # 4, 1 RepetitionTime
(0018,0081) DS [9.424] # 6, 1 EchoTime
(0018,0082) DS [0] # 2, 1 InversionTime
(0018,0083) DS [1] # 2, 1 NumberOfAverages
(0018,0084) DS [127.723758] # 10, 1 ImagingFrequency
(0018,0085) SH [1H] # 2, 1 ImagedNucleus
(0018,0086) IS [1] # 2, 1 EchoNumbers
(0018,0087) DS [3] # 2, 1 MagneticFieldStrength
(0018,0088) DS [3] # 2, 1 SpacingBetweenSlices
(0018,0091) IS [3] # 2, 1 EchoTrainLength
(0018,0093) DS [100] # 4, 1 PercentSampling
(0018,0094) DS [100] # 4, 1 PercentPhaseFieldOfView
(0018,0095) DS [177.578] # 8, 1 PixelBandwidth
(0018,1000) LO [056MRE3TH2565370] # 16, 1 DeviceSerialNumber
(0018,1020) LO [15\LX\MR Software release:15.0_M4_0910.a] # 40, 3 SoftwareVersions
(0018,1088) IS [0] # 2, 1 HeartRate
(0018,1090) IS [0] # 2, 1 CardiacNumberOfImages
(0018,1094) IS [0] # 2, 1 TriggerWindow
(0018,1100) DS [250] # 4, 1 ReconstructionDiameter
(0018,1250) SH [AAABBBBRAIN] # 8, 1 ReceiveCoilName
(0018,1310) US 0\256\256\0 # 8, 4 AcquisitionMatrix
(0018,1312) CS [ROW] # 4, 1 InPlanePhaseEncodingDirection
(0018,1314) DS [90] # 2, 1 FlipAngle
(0018,1315) CS [N] # 2, 1 VariableFlipAngleFlag
(0018,1316) DS [1.3561] # 6, 1 SAR
(0018,5100) CS [HFS] # 4, 1 PatientPosition
(0020,000d) UI [1.2.840.113619.2.244.3596.11861676.21950.1354710592.344] # 56, 1 StudyInstanceUID
(0020,000e) UI [1.2.840.113619.2.244.3596.11861676.21950.1354710592.349] # 56, 1 SeriesInstanceUID
(0020,0010) SH [35313] # 6, 1 StudyID
(0020,0011) IS [3] # 2, 1 SeriesNumber
(0020,0012) IS [1] # 2, 1 AcquisitionNumber
(0020,0013) IS [1] # 2, 1 InstanceNumber
(0020,0032) DS [-130.858\-141.195\94.3036] # 26, 3 ImagePositionPatient
(0020,0037) DS [0.999785\-0.0207525\0\0.0207528\0.999767\0.00598169] # 52, 6 ImageOrientationPatient
(0020,0052) UI [1.2.840.113619.2.244.3596.11861676.21950.1354710592.343] # 56, 1 FrameOfReferenceUID
(0020,0060) CS (no value available) # 0, 0 Laterality
(0020,1002) IS [55] # 2, 1 ImagesInAcquisition
(0020,1040) LO (no value available) # 0, 0 PositionReferenceIndicator
(0020,1041) DS [95.04837036] # 12, 1 SliceLocation
(0020,9056) SH [1] # 2, 1 StackID
(0020,9057) UL 1 # 4, 1 InStackPositionNumber
(0028,0002) US 1 # 2, 1 SamplesPerPixel
(0028,0004) CS [MONOCHROME2] # 12, 1 PhotometricInterpretation
(0028,0010) US 256 # 2, 1 Rows
(0028,0011) US 256 # 2, 1 Columns
(0028,0030) DS [0.9766\0.9766] # 14, 2 PixelSpacing
(0028,0100) US 16 # 2, 1 BitsAllocated
(0028,0101) US 16 # 2, 1 BitsStored
(0028,0102) US 15 # 2, 1 HighBit
(0028,0103) US 1 # 2, 1 PixelRepresentation
(0028,0106) SS 0 # 2, 1 SmallestImagePixelValue
(0028,0107) SS 133 # 2, 1 LargestImagePixelValue
(0028,1050) DS [66] # 2, 1 WindowCenter
(0028,1051) DS [133] # 4, 1 WindowWidth
(0032,1033) LO [Anonymized] # 10, 1 RequestingService
(0040,0253) SH [MR1354787338] # 12, 1 PerformedProcedureStepID
(0040,0260) SQ (Sequence with explicit length #=0) # 0, 1 PerformedProtocolCodeSequence
(fffe,e0dd) na (SequenceDelimitationItem for re-encod.) # 0, 0 SequenceDelimitationItem
(0040,0280) ST [Anonymized] # 10, 1 CommentsOnThePerformedProcedureStep
(1110,21b0) UN 0a\00 # 2, 1 Unknown Tag & Data
(7fe0,0010) OB (PixelSequence #=2) # u/l, 1 PixelData
(fffe,e000) pi 00\00\00\00 # 4, 1 Item
(fffe,e000) pi ff\d8\ff\fe\00\26\43\6f\6d\70\72\65\73\73\65\64\20\62\79\20\44\69... # 50160, 1 Item
(fffe,e0dd) na (SequenceDelimitationItem) # 0, 0 SequenceDelimitationItem
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