From leigh.ibis at gmail.com  Fri Jan 18 13:48:33 2019
From: leigh.ibis at gmail.com (Leigh MacIntyre)
Date: Fri, 18 Jan 2019 13:48:33 -0500
Subject: [Loris-dev] LORIS Meeting : Room 112, Duff building
Message-ID: <CAKRieNajdGCA4CXXL+9GJpsSeKfD_rgUa=isFFYZ1HUS67kaWQ@mail.gmail.com>

Hi Everyone,

This Tuesday, we are meeting in the Duff Building in room 112 at our usual
time from 11am-12pm.

Here is the meeting agenda:

https://docs.google.com/document/d/1PbYAhEpYeQ2ZO7_bY-SLTQUefVOabNfm96nS8ggf9J0/edit?usp=sharing

Thanks!

Leigh

-- 
*Leigh MacIntyre*
Project Officer

Infant Brain Imaging Study (IBIS)
McGill Centre for Integrative Neuroscience (MCIN)
Montreal Neurological Institute (MNI)
McGill University
Office: 514-398-5220
Web Site: http://mcin-cnim.ca
                 www.ibis-network.org
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From AMORALESPINZON at bwh.harvard.edu  Tue Jan 29 19:14:18 2019
From: AMORALESPINZON at bwh.harvard.edu (Morales Pinzon, Alfredo)
Date: Wed, 30 Jan 2019 00:14:18 +0000
Subject: [Loris-dev] [IPMSA] Upload NIFTI or MINC - No DICOMS available
Message-ID: <SN6PR04MB3998E1B8B927160C4FEE256A8F900@SN6PR04MB3998.namprd04.prod.outlook.com>

Dear LORIS-dev team,


In the IPMSA project we have some trials without DICOM images, instead their images come in NIFTI format. Do you have a procedure for the uploading of NIFTI images? We can also convert the images from NIFTI to MINC if this helps.


Best regards,

Alfredo.


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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From cecile.madjar at mcin.ca  Wed Jan 30 11:04:49 2019
From: cecile.madjar at mcin.ca (Cecile Madjar)
Date: Wed, 30 Jan 2019 11:04:49 -0500
Subject: [Loris-dev] [IPMSA] Upload NIFTI or MINC - No DICOMS available
In-Reply-To: <SN6PR04MB3998E1B8B927160C4FEE256A8F900@SN6PR04MB3998.namprd04.prod.outlook.com>
References: <SN6PR04MB3998E1B8B927160C4FEE256A8F900@SN6PR04MB3998.namprd04.prod.outlook.com>
Message-ID: <CAMkiY3f1b4tqjbsFxGFeDp08E7TFVyrJncvsQqAfqhTgMxh5DQ@mail.gmail.com>

Dear Alfredo,

We actually added those 2 functionalities in release 20.2 that is supposed
to get out this week. Here is how you will be able to do that once you
upgrade to 20.2.

   - If you have a MINC file but no DICOM files, you can directly insert
   the MINC file using `minc_insertion.pl` with the `-force` option instead
   of the usual `-tarchivePath` option. So call you script as follow: `
   minc_insertion.pl -profile <prod or name of you profile file> -mincPath
   <path to the MINC file> -force`
   - If you have only NIfTI files, then you can insert them using a new
   script that was created for release 20.2 called `
   imaging_non_minc_insertion.pl` in the `uploadNeuroDB` folder. Look at
   the documentation of this PR (#271
   <https://github.com/aces/Loris-MRI/pull/271>) to see how to call this
   script (or also the perldoc of the script using `perldoc <script_name.pl
   >`; note that this is available for all our scripts in LORIS-MRI now
   since release 19.1.

Hope this helps. Let me know if anything is unclear. If it is not, it means
the documentation is not clear enough and we need to improve it. We don't
want that :).

Best wishes,

C?cile

On Tue, Jan 29, 2019 at 7:14 PM Morales Pinzon, Alfredo <
AMORALESPINZON at bwh.harvard.edu> wrote:

> Dear LORIS-dev team,
>
>
> In the IPMSA project we have some trials without DICOM images, instead
> their images come in NIFTI format. Do you have a procedure for the
> uploading of NIFTI images? We can also convert the images from NIFTI to
> MINC if this helps.
>
>
> Best regards,
>
> Alfredo.
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
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