[Loris-dev] Error "not a unique file" inserting segmentation files in LORIS

[Morales Pinzon, Alfredo]

Dear DevLoris Team,

I started the uploading process of processed files, segmentations and transformations, using the file "register_processed_data.pl" but some files are not being uploaded. The error reported in "data/logs/registerProcessed" show the following log for one of the files that could not be inserted:

-------------------------------------------------------------------------------
==> Successfully connected to database
Log file, 2019-08-29_19:08:17


==>Mapped DICOM parameters
 -> using user-defined filterParameters for /xxx/w024/gvf_ISPC-stx152lsq6.mnc.gz

==> Verifying acquisition center
 - Center Name  : UNKN
 - CenterID     : 0
 -> Set ScannerID to 0.

==> Data found for candidate   : 123456 - Visit: w024
 -> Set SessionID to 28269.
 -> Set SourceFileID to 49598.
 -> Set AcquisitionProtocolID to 1013.
 -> Set CoordinateSpace to stx152lsq6.
 -> Set SourcePipeline to ConsensusGd.
 -> Set PipelineDate to 2019-08-29.
 -> Set OutputType to gvf.
 -> Set md5hash to b877648ed0ef9a7458ad4931f4dbfd11.

==> NeuroDB::File=HASH(0x136baa8) is not a unique file and will not be added to database.
-------------------------------------------------------------------------------

I checked the md5hash for a previous uploaded file, which is different from the previous, but the same "md5hash" was calculated. See the following log:

-------------------------------------------------------------------------------

==> Successfully connected to database
Log file, 2019-08-19_10:11:53


==>Mapped DICOM parameters
 -> using user-defined filterParameters for

==> Verifying acquisition center
 - Center Name  : UNKN
 - CenterID     : 0
 -> Set ScannerID to 0.

==> Data found for candidate   : 123456 - Visit: baseline
 -> Set SessionID to 28268.
 -> Set SourceFileID to 49593.
 -> Set AcquisitionProtocolID to 1013.
 -> Set CoordinateSpace to stx152lsq6.
 -> Set SourcePipeline to T2Vol.
 -> Set PipelineDate to 2019-08-19.
 -> Set OutputType to gvf.
 -> Set md5hash to b877648ed0ef9a7458ad4931f4dbfd11.
File /xxx/baseline/gvf_ISPC-stx152lsq6.mnc.gz
 moved to:
 /yyy/data/assembly/123456/baseline/mri/processed/T2Vol/IPMSA_123456_baseline_t1c_001_gvf_001.mnc.gz

==> FAILED TO INSERT INTERMEDIARY FILES FOR 112945!

Making JIV

 ==> Registered /data_/ipmsa/loris_data/IPMSA/data/assembly/307024/baseline/mri/processed/T2Vol/IPMSA_307024_baseline_t1c_001_gvf_001.mnc.gz in database, given FileID: 112945
-------------------------------------------------------------------------------

Here are the corresponding md5 for each file calculated using the command md5sum:
/xxx/w024/gvf_ISPC-stx152lsq6.mnc.gz   7306010346c4614d8e338595b386ca5c
/xxx/baseline/gvf_ISPC-stx152lsq6.mnc.gz 22107253f8b87c9918ac7f82fdc22c36

Could you please help me inserting those files which are different in size and md5 from previous uploaded files? The only similarity between the previous uploaded files and the ones that could not be uploaded is the filename.

Let me know if you need more information.

Regards,
Alfredo.



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