[Loris-dev] LORIS installation inquiry -- regarding
Shen Wang
wangshen.mcin at gmail.com
Tue Aug 13 20:42:51 EDT 2019
Hi Yubu,
I saw you error log, it is very helpful. It seems like you didn't create
the config.xml in you project folder successfully.
You need to run this [sudo ./install.sh ] in the tools folder. ex. [
install at install-dev:/var/www/Loris/tools$ sudo ./install.sh]
Then check if project/confilg.xml file exists. if it can't create the
project folder and config.xml, it is definitely your ubuntu permission
issue.
Please do it manually in your loris folder. sudo chgrp apache project sudo
chmod 770 project
Then you need to do [sudo ./install.sh ] , then load the installdb.php
again.
Please let me know if you have any questions.
Regards.
Shen
On Tue, 13 Aug 2019 at 20:16, 이유부 <basilia1123 at gmail.com> wrote:
> Dear Shen,
>
>
> 1 Which version of Loris are you using?
> We are using Loris-21.0.0
>
> 2 Mysql version?
> The output of mysql -V is
> mysql Ver 14.14 Distrib 5.7.27, for Linux (x86_64) using EditLine wrapper
>
> 3 [sudo tail -f /var/log/apache2/loris-error.log] Please running this
> in the backend,
> then try loading the installdb.php again, with a different database
> name. Please send us the error message.
>
> cat loris-error.log does not show any content however loris-error.log.1
> shows the following:
>
> yubu at data:/var/log/apache2$ cat loris-error.log.1
>
> [Tue Aug 13 09:12:41.214417 2019] [php7:error] [pid 17930] [client
> ::1:58960] PHP Fatal error: Uncaught ConfigurationException: Config file
> config.xml does not exist in the defined locations. in
> /var/www/loris/php/libraries/NDB_Config.class.inc:139\nStack trace:\n#0
> /var/www/loris/php/libraries/NDB_Config.class.inc(66):
> NDB_Config->configFilePath()\n#1
> /var/www/loris/php/libraries/NDB_Factory.class.inc(118):
> NDB_Config::singleton(NULL)\n#2
> /var/www/loris/php/libraries/NDB_Client.class.inc(54):
> NDB_Factory->config(NULL)\n#3 /var/www/loris/htdocs/index.php(27):
> NDB_Client->initialize()\n#4 {main}\n thrown in
> /var/www/loris/php/libraries/NDB_Config.class.inc on line 139, referer:
> http://localhost/installdb.php
>
> [Tue Aug 13 09:14:53.843582 2019] [php7:notice] [pid 17932] [client
> ::1:58992] SQLSTATE[HY000] [1698] Access denied for user 'root'@'localhost',
> referer: http://localhost/installdb.php
> [Tue Aug 13 09:14:53.843708 2019] [php7:error] [pid 17932] [client
> ::1:58992] PHP Fatal error: Uncaught Error: Call to a member function
> exec() on null in
> /var/www/loris/php/installer/Installer.class.inc:374\nStack trace:\n#0
> /var/www/loris/php/installer/Installer.class.inc(235):
> LORIS\\Installer\\Installer->_sourceSchemaFile(Object(LORIS\\Installer\\Database),
> '00-schema.sql')\n#1 /var/www/loris/htdocs/installdb.php(109):
> LORIS\\Installer\\Installer->sourceSchema(Array)\n#2 {main}\n thrown in
> /var/www/loris/php/installer/Installer.class.inc on line 374, referer:
> http://localhost/installdb.php
>
> Further, we accidentally deleted the loris-error.log and loris-error.log.1
> files. Is there a way to generate them again?
>
> Thanks for the prompt reply
>
> Yours Sincerely,
>
> ======================================================
>
> Yubu Lee, Ph.D.
>
> Research Professor,
>
> Center for Neuroscience Imaging Research, Institute for Basic Science
>
>
> #86332, N Center, SungKyunKwan University
> 2066, Seobu-Ro, Jangan-gu, Suwon, Gyeonggi-do, 16419, Korea
>
> E-mail: basilia1123 at gmail.com
>
> Tel: +82-31-299-4411
>
> Fax: +82-31-299-4506
>
> ======================================================
>
>
> 2019년 8월 13일 (화) 오후 10:21, Shen Wang <wangshen.mcin at gmail.com>님이 작성:
>
>> Hi Yubu,
>> We need more information to debug this issue.
>> 1 Which version of Loris are you using?
>> 2 Mysql version?
>> 3 [sudo tail -f /var/log/apache2/loris-error.log] Please running this
>> in the backend,
>> then try loading the installdb.php again, with a different database
>> name. Please send us the error message.
>>
>> Your Sincerely,
>> Shen
>>
>> On Mon, 12 Aug 2019 at 22:27, 이유부 <basilia1123 at gmail.com> wrote:
>>
>>> Dear Sir/Madam,
>>>
>>> We are currently trying to install LORIS on Ubuntu 18.04 platform
>>> following the steps from
>>> https://github.com/aces/Loris/wiki/Installing-Loris-in-Depth
>>>
>>> 1. Following the above link, we installed the prerequisites mentioned
>>> in
>>> https://github.com/aces/Loris/wiki/Installing-Loris-in-Depth#getting-prerequisites,
>>> which are all verified to be installed normally.
>>>
>>> 2. We ensured that mySQL credentials are set up properly (as pasted
>>> below)
>>> mysql> select host, user, authentication_string from user
>>> -> ;
>>>
>>> +-----------+------------------+-------------------------------------------+
>>> | host | user | authentication_string
>>> |
>>>
>>> +-----------+------------------+-------------------------------------------+
>>> | localhost | root |
>>> |
>>> | localhost | mysql.session |
>>> *THISISNOTAVALIDPASSWORDTHATCANBEUSEDHERE |
>>> | localhost | mysql.sys |
>>> *THISISNOTAVALIDPASSWORDTHATCANBEUSEDHERE |
>>> | localhost | debian-sys-maint |
>>> *C9BF7C6E59BFF0FA879E6650D174264C9EE87F25 |
>>>
>>> +-----------+------------------+-------------------------------------------+
>>> 4 rows in set (0.00 sec)
>>>
>>> mysql> update user set authentication_string=password('yubu') where
>>> user='root';
>>> Query OK, 1 row affected, 1 warning (0.00 sec)
>>> Rows matched: 1 Changed: 1 Warnings: 1
>>>
>>> mysql> flush privileges;
>>> Query OK, 0 rows affected (0.01 sec)
>>>
>>> mysql> select host, user, authentication_string from user
>>> -> ;
>>>
>>> +-----------+------------------+-------------------------------------------+
>>> | host | user | authentication_string
>>> |
>>>
>>> +-----------+------------------+-------------------------------------------+
>>> | localhost | root |
>>> *E311E16EECE7E8900098CFEB4103D5266A343F5F |
>>> | localhost | mysql.session |
>>> *THISISNOTAVALIDPASSWORDTHATCANBEUSEDHERE |
>>> | localhost | mysql.sys |
>>> *THISISNOTAVALIDPASSWORDTHATCANBEUSEDHERE |
>>> | localhost | debian-sys-maint |
>>> *C9BF7C6E59BFF0FA879E6650D174264C9EE87F25 |
>>>
>>> +-----------+------------------+-------------------------------------------+
>>> 4 rows in set (0.00 sec)
>>>
>>> 3. We then opened http://localhost/installdb.php and have gotten the
>>> login page for LORIS installation and typed the credentials as follows:
>>> [image: Screenshot from 2019-08-13 09-14-51.png]
>>> 4. Once we submitted the page we obtained error as follows
>>>
>>> [image: Screenshot from 2019-08-13 09-14-56.png]
>>>
>>>
>>>
>>> We really do not know how to proceed further from this point onward.
>>> Kindly let us know how to proceed further in order to get the LORIS
>>> installed.
>>>
>>> Thank you.
>>>
>>> Your Sincerely,
>>>
>>> ======================================================
>>>
>>> Yubu Lee, Ph.D.
>>>
>>> Research Professor,
>>>
>>> Center for Neuroscience Imaging Research, Institute for Basic Science
>>>
>>>
>>> #86332, N Center, SungKyunKwan University
>>> 2066, Seobu-Ro, Jangan-gu, Suwon, Gyeonggi-do, 16419, Korea
>>>
>>> E-mail: basilia1123 at gmail.com
>>>
>>> Tel: +82-31-299-4411
>>>
>>> Fax: +82-31-299-4506
>>>
>>> ======================================================
>>> _______________________________________________
>>> Loris-dev mailing list
>>> Loris-dev at bic.mni.mcgill.ca
>>> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>>
>>
>>
>> --
>> Shen Wang
>> Loris <https://github.com/aces/Loris> Developer
>> Montreal Neurological Institute
>> McGill University
>>
>>
--
Shen Wang
Loris <https://github.com/aces/Loris> Developer
Montreal Neurological Institute
McGill University
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