[Loris-dev] Data insertion problem

[Ali Aarefi]

Dear LORIS support team,
I'm a research assistant at NIAG (Neuro Imaging and Analysis Group) at
NeuroImaging Center, Imam Khomeini Hospital, Tehran, Iran as a part of TUMS
(Tehran University of Medical Science).

We've been trying to upload DICOM files using imaging uploader on our
already installed LORIS server but we faced some problems.

All of following sections were done successfully with respect to github
wiki page:
1. Installing loris
2. Project customization

Third section (Behavioural database) ignored (does it matter?)

And in the fourth section (imaging database) the subsections mentioned
below was done successfully:
1. Install the imaging pipeline codebase
2. Setup imaging insertion scripts
3. Loading a scan into loris

In this subsection, while executing post-upload script (pre-processing and
insertion into loris) an error has occurred in line 19 in
imaging_upload_file.pl with this following message:


command : uploadNeuroDB/imaging_upload_file.pl -profile prod -verbose
-upload_id 1 ~/Desktop/MTL0000_336898_V1.zip # we know that the .zip file
should be in /data/incoming , but after loading the scan into loris, this
directory kept empty !

```
Can't locate DBI.pm in @INC (you may need to install the DBI module) (@INC
contains: /data/project-name/bin/mri/uploadNeuroDB /etc/perl
/usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1
/usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5
/usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22
/usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at
/data/project-name/bin/mri/uploadNeuroDB/NeuroDB/DBI.pm line 19.
BEGIN failed--compilation aborted at
/data/project-name/bin/mri/uploadNeuroDB/NeuroDB/DBI.pm line 19.
Compilation failed in require at uploadNeuroDB/imaging_upload_file.pl line
19.
BEGIN failed--compilation aborted at uploadNeuroDB/imaging_upload_file.pl
line 19.
```

And also the /data/incoming directory is empty (the uploaded file that was
assigned an upload_id, doesn't exist in this directory)

Some other information that might be useful:
- The upload successful pop-up message was shown in imaging uploader module.
- upload_id was assigned to our upload tries.
- In the imaging uploader, there is no progress status.
- In the server processes manager module, some columns are meaningless like
error codes with respect to loris documents.

Some screenshots attacked to this email for more information.
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