From christine.rogers at mcgill.ca Wed Feb 21 17:30:44 2018 From: christine.rogers at mcgill.ca (Christine Rogers) Date: Wed, 21 Feb 2018 17:30:44 -0500 Subject: [Loris-dev] Fwd: [aces/Loris] LORIS Release 19.0.0 In-Reply-To: References: Message-ID: For any Loris-dev community members not subscribed to our GitHub notifications, We're happy to announce the release of LORIS 19.0.0 The accompanying release of Loris-MRI 19.0.0 will follow shortly. Best regards, The LORIS Team ---------- Forwarded message ---------- Subject: [aces/Loris] LORIS Release 19.0.0 To: aces/Loris Cc: Subscribed - Full list of changes New Features The primary new functionality of LORIS 19.0 is the ability to have publicly accessible modules, which can be accessed by users that are not logged in. This architecture is currently used by the login module, but may be used by any module that has a public component and is available for any content to be hosted in LORIS. Updates and Improvements All LORIS modules which are part of the core LORIS distribution have been updated to use the "modern" module architecture, where there is a Module class within the module's namespace which describes metadata about the module (such as whether or not it should be publicly available.) Modules that do not have a Module class should still work, but are deprecated and support will be removed in a future LORIS version. Along with this new feature, 19.0 contains a number of bug fixes and fixes a number of warnings that were generated by certain pages and minor improvements such as the media and imaging uploader displaying the maximum upload size of a file to the user before they attempt to upload a file, rather than an error afterwards. Caveats for Existing Projects The _setupPage() function of LORIS pages have been removed. This was used as a pseudo-constructor, and most of the logic has been moved to the real class constructor. (The setup() function still exists, to set up the page after authentication, and in most cases all that is required is renaming the page function and removing assignments to $this->form or $this->CommentID.) Help content for modules is now managed as markdown files within the help/ directory of the module. Any customized content from the help editor should be backed up before upgrading. (The help_editor module remains as a way to customize help content for instruments.) Upgrade Notes To upgrade LORIS from 18.x, you must do the following: 1. Upgrade the code 2. Run the script tools/cleanup_mri_tables_for_19-0_release.php from the LORIS tools directory to ensure there is no orphaned data in tables that this release adds foreign keys to. (Note: This script will fail if you aren't inside the tools directory.) 3. Run the SQL patch SQL/Release_patches/18.0_To_19.0_upgrade.sql ? You are receiving this because you are subscribed to this thread. View it on GitHub or mute the thread . -- christine.rogers at mcgill.ca McGill Centre for Integrative Neuroscience | MCIN.ca Montreal Neurological Institute McGill University | Montreal | Canada -------------- next part -------------- An HTML attachment was scrubbed... URL: From Bonhwang.Koo at childmind.org Wed Feb 28 13:08:14 2018 From: Bonhwang.Koo at childmind.org (Bonhwang Koo) Date: Wed, 28 Feb 2018 18:08:14 +0000 Subject: [Loris-dev] Updating LORIS and DQT Message-ID: <696CA6C4-9BBC-493F-B803-392C82876431@childmind.org> Hi all, I updated LORIS from version 17.0 to 18.0.0a, and it looks like everything went smoothly, except when I log onto the data query tool, none of the instruments appear under the Define Fields tab. However, I checked Fauxton and the data are all still there, and I also tried running my import script on the one of the assessments. I also made sure to change the database tag in the config.xml file. Are there any other steps I need to take when updating LORIS so that CouchDB connects to the DQT? Best, -- Bonhwang Koo Research Assistant, CDB Child Mind Institute childmind.org 445 Park Avenue (entrance on 56th Street) New York, NY 10022 E: Bonhwang.Koo at childmind.org p: 646.625.4398 f: 646.625.4348 Facebook: facebook.com/ChildMindInstitute | Follow us on Twitter: twitter.com/ChildMindDotOrg --- This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email. -------------- next part -------------- An HTML attachment was scrubbed... URL: From xavier.lecoursboucher at mcgill.ca Wed Feb 28 13:35:39 2018 From: xavier.lecoursboucher at mcgill.ca (Xavier Lecours Boucher, Mr) Date: Wed, 28 Feb 2018 18:35:39 +0000 Subject: [Loris-dev] Updating LORIS and DQT In-Reply-To: <696CA6C4-9BBC-493F-B803-392C82876431@childmind.org> References: <696CA6C4-9BBC-493F-B803-392C82876431@childmind.org> Message-ID: Hi, 18.0 is the version where we renamed an entry for CouchDB in config.xml. There is a release note about it: [Config] In the config.xml file, the subtag of CouchDB was renamed to to avoid conflicts with the MySQL database config setting. If you have CouchDB setup in your config.xml, you'll need to rename this tag. Can you confirm that this step has been done? Thank you. Xavier Lecours Loris Dev ________________________________ From: loris-dev-bounces at bic.mni.mcgill.ca on behalf of Bonhwang Koo Sent: February 28, 2018 1:08 PM To: loris-dev at bic.mni.mcgill.ca Subject: [Loris-dev] Updating LORIS and DQT Hi all, I updated LORIS from version 17.0 to 18.0.0a, and it looks like everything went smoothly, except when I log onto the data query tool, none of the instruments appear under the Define Fields tab. However, I checked Fauxton and the data are all still there, and I also tried running my import script on the one of the assessments. I also made sure to change the database tag in the config.xml file. Are there any other steps I need to take when updating LORIS so that CouchDB connects to the DQT? Best, -- Bonhwang Koo Research Assistant, CDB Child Mind Institute childmind.org [https://childmind.org/wp-content/uploads/Social_Share_CMI.png] Child Mind Institute childmind.org We are an independent nonprofit dedicated to transforming the lives of children struggling with mental health and learning disorders. 445 Park Avenue (entrance on 56th Street) New York, NY 10022 E: Bonhwang.Koo at childmind.org p: 646.625.4398 f: 646.625.4348 Facebook: facebook.com/ChildMindInstitute | Follow us on Twitter: twitter.com/ChildMindDotOrg Child Mind Institute (@ChildMindDotOrg) | Twitter twitter.com 16K tweets ? 571 photos/videos ? 21.5K followers. Check out the latest Tweets from Child Mind Institute (@ChildMindDotOrg) [https://scontent-sea1-1.xx.fbcdn.net/v/t1.0-1/p200x200/21151445_1463215833745090_3971660059506727265_n.jpg?oh=dd2f3e78aa5cb2c702a27742c7890c45&oe=5B21C300] Child Mind Institute - Home | Facebook facebook.com Child Mind Institute, New York, New York: Rated 4.7 of 5, check 246 Reviews of Child Mind Institute, Mental Health Service --- This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email. -------------- next part -------------- An HTML attachment was scrubbed... URL: From Bonhwang.Koo at childmind.org Wed Feb 28 13:50:45 2018 From: Bonhwang.Koo at childmind.org (Bonhwang Koo) Date: Wed, 28 Feb 2018 18:50:45 +0000 Subject: [Loris-dev] Updating LORIS and DQT In-Reply-To: References: <696CA6C4-9BBC-493F-B803-392C82876431@childmind.org> Message-ID: Xavier, Turns out I changed to subtag to dbname and didn?t capitalize the N. Now it works. Thanks! Best, -- Bonhwang Koo Research Assistant, CDB Child Mind Institute childmind.org 445 Park Avenue (entrance on 56th Street) New York, NY 10022 E: Bonhwang.Koo at childmind.org p: 646.625.4398 f: 646.625.4348 Facebook: facebook.com/ChildMindInstitute | Follow us on Twitter: twitter.com/ChildMindDotOrg --- This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email. From: "Xavier Lecours Boucher, Mr" Date: Wednesday, February 28, 2018 at 1:35 PM To: Bonhwang Koo , "loris-dev at bic.mni.mcgill.ca" Subject: Re: Updating LORIS and DQT Hi, 18.0 is the version where we renamed an entry for CouchDB in config.xml. There is a release note about it: [Config] In the config.xml file, the subtag of CouchDB was renamed to to avoid conflicts with the MySQL database config setting. If you have CouchDB setup in your config.xml, you'll need to rename this tag. Can you confirm that this step has been done? Thank you. Xavier Lecours Loris Dev ________________________________ From: loris-dev-bounces at bic.mni.mcgill.ca on behalf of Bonhwang Koo Sent: February 28, 2018 1:08 PM To: loris-dev at bic.mni.mcgill.ca Subject: [Loris-dev] Updating LORIS and DQT Hi all, I updated LORIS from version 17.0 to 18.0.0a, and it looks like everything went smoothly, except when I log onto the data query tool, none of the instruments appear under the Define Fields tab. However, I checked Fauxton and the data are all still there, and I also tried running my import script on the one of the assessments. I also made sure to change the database tag in the config.xml file. Are there any other steps I need to take when updating LORIS so that CouchDB connects to the DQT? Best, -- Bonhwang Koo Research Assistant, CDB Child Mind Institute childmind.org [mage removed by sender.] Child Mind Institute childmind.org We are an independent nonprofit dedicated to transforming the lives of children struggling with mental health and learning disorders. 445 Park Avenue (entrance on 56th Street) New York, NY 10022 E: Bonhwang.Koo at childmind.org p: 646.625.4398 f: 646.625.4348 Facebook: facebook.com/ChildMindInstitute | Follow us on Twitter: twitter.com/ChildMindDotOrg Child Mind Institute (@ChildMindDotOrg) | Twitter twitter.com 16K tweets ? 571 photos/videos ? 21.5K followers. Check out the latest Tweets from Child Mind Institute (@ChildMindDotOrg) [mage removed by sender.] Child Mind Institute - Home | Facebook facebook.com Child Mind Institute, New York, New York: Rated 4.7 of 5, check 246 Reviews of Child Mind Institute, Mental Health Service --- This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email. -------------- next part -------------- An HTML attachment was scrubbed... URL: From rogers at neurodevnet.ca Wed Feb 28 18:30:28 2018 From: rogers at neurodevnet.ca (Christine Rogers) Date: Wed, 28 Feb 2018 18:30:28 -0500 Subject: [Loris-dev] test Message-ID: this is a test. -------------- next part -------------- An HTML attachment was scrubbed... URL: