From christine.rogers at mcgill.ca  Thu Mar  9 13:42:07 2017
From: christine.rogers at mcgill.ca (Christine Rogers)
Date: Thu, 9 Mar 2017 13:42:07 -0500
Subject: [Loris-dev] Setting up LORIS instance -- help with PSCID
In-Reply-To: <b188b5d9d8774eb383fe5e5627e79dac@BY2PR0301MB0662.namprd03.prod.outlook.com>
References: <b188b5d9d8774eb383fe5e5627e79dac@BY2PR0301MB0662.namprd03.prod.outlook.com>
Message-ID: <CALbt7NC_T7UUGkopQgpD5b0BMiMpfsvWOE3imKzBNmU=jwruTg@mail.gmail.com>

Hi Michael,
Thanks for your question - since this is a technical/setup issue, I'm
responding to you as well as the Loris-dev listserv for any further input
from the Loris team and community, since another Loris project out there
may have already implemented the solution you're looking for.

I'm setting up a LORIS instance and am having trouble setting up the rules
> for the PSCID. I'd like the PSCID to have the structure:
> $projectname_$sitename_4digitcode (eg. AAA01_CDE_0001). Is there a way to
> do this in the config.xml?
> This is what I have currently. Is there a way to call the "Name" column in
> Project and the "Alias" column in psc to get all the site codes (instead of
> siteAbbrev which only lets you register candidates from your site)?
> <PSCID>
>     <generation>user</generation>
>     <structure>
>         <seq type="????" />
>         <seq type="static" "_"/>
>         <seq type="set" CDE|FGH|IJK|LMN/>
>         <seq type="static" "_"/>
>         <seq type="numeric" minLength="4"/>
>     </structure>
> </PSCID>


Someone with a little coding knowledge can easily customize and adapt the
Candidate:validatePSCID()
<https://github.com/aces/Loris/blob/17.0-dev/php/libraries/Candidate.class.inc#L797>
and Utility class functions
<https://github.com/aces/Loris/blob/17.0-dev/php/libraries/Utility.class.inc#L377>
that check for a specific pattern in user-input PSCID formatting.

E.g. you could adapt these functions to check all site abbreviations (or
Alias), and could define in config.xml a new <seq> type for project, and
add a little code to validate this (across all valid projects).

Also note we're currently adapting the User-Site relationship
<https://github.com/aces/Loris/pull/2468> for Loris 17.1 to allow users to
register a candidate at any site the user is appropriately attached to.

Best,
Christine

-- 
christine.rogers at mcgill.ca
LORIS data systems | loris.ca
McGill Centre for Integrative Neuroscience | MCIN.ca
McConnell Brain Imaging Centre
Montreal Neurological Institute
McGill University | Montreal | Canada


On Wed, Mar 8, 2017 at 3:59 PM, Michael Joseph> wrote:

> Hi all,
>
> I'm setting up a LORIS instance and am having trouble setting up the rules
> for the PSCID. I'd like the PSCID to have the structure:
> $projectname_$sitename_4digitcode (eg. AAA01_CDE_0001). Is there a way to
> do this in the config.xml?
>
> This is what I have currently. Is there a way to call the "Name" column in
> Project and the "Alias" column in psc to get all the site codes (instead of
> siteAbbrev which only lets you register candidates from your site)?
>
> <PSCID>
>     <generation>user</generation>
>     <structure>
>         <seq type="????" />
>         <seq type="static" "_"/>
>         <seq type="set" CDE|FGH|IJK|LMN/>
>         <seq type="static" "_"/>
>         <seq type="numeric" minLength="4"/>
>     </structure>
> </PSCID>
>
> Thanks,
> Michael
>
> ------------------------------
>
> This e-mail may contain confidential, personal and/or health
> information(information which may be subject to legal restrictions on use,
> retention and/or disclosure) for the sole use of the intended recipient.
> Any review or distribution by anyone other than the person for whom it was
> originally intended is strictly prohibited. If you have received this
> e-mail in error, please contact the sender and delete all copies.
>
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From michael.joseph at sickkids.ca  Thu Mar  9 14:14:17 2017
From: michael.joseph at sickkids.ca (Michael Joseph)
Date: Thu, 9 Mar 2017 19:14:17 +0000
Subject: [Loris-dev] Setting up LORIS instance -- help with PSCID
In-Reply-To: <CALbt7NC_T7UUGkopQgpD5b0BMiMpfsvWOE3imKzBNmU=jwruTg@mail.gmail.com>
References: <b188b5d9d8774eb383fe5e5627e79dac@BY2PR0301MB0662.namprd03.prod.outlook.com>,
	<CALbt7NC_T7UUGkopQgpD5b0BMiMpfsvWOE3imKzBNmU=jwruTg@mail.gmail.com>
Message-ID: <31299C7800456842BFE0898F60FBA89E902720@SKMBXX01.sickkids.ca>

Thank you for your reply Christine.

I think I was a little confused earlier by the PSCID and DCCID. From what I understand now, the PSCID is static for each site and the DCCID changes for each subject. The full subject ID is a combination of $PSCID_$DCCID_$Visit_label. So to suit our study, the PSCID could be $projectname_$sitename. And the DCCID could be changed to manual entry of a 4 digit code instead of a randomly generated 6 digit code. Is this correct?

Thanks,
Michael

________________________________
From: Christine Rogers [christine.rogers at mcgill.ca]
Sent: March 9, 2017 1:42 PM
To: Michael Joseph
Cc: loris-dev at bic.mni.mcgill.ca
Subject: Re: Setting up LORIS instance -- help with PSCID

Hi Michael,
Thanks for your question - since this is a technical/setup issue, I'm responding to you as well as the Loris-dev listserv for any further input from the Loris team and community, since another Loris project out there may have already implemented the solution you're looking for.

I'm setting up a LORIS instance and am having trouble setting up the rules for the PSCID. I'd like the PSCID to have the structure: $projectname_$sitename_4digitcode (eg. AAA01_CDE_0001). Is there a way to do this in the config.xml?
This is what I have currently. Is there a way to call the "Name" column in Project and the "Alias" column in psc to get all the site codes (instead of siteAbbrev which only lets you register candidates from your site)?
<PSCID>
    <generation>user</generation>
    <structure>
        <seq type="????" />
        <seq type="static" "_"/>
        <seq type="set" CDE|FGH|IJK|LMN/>
        <seq type="static" "_"/>
        <seq type="numeric" minLength="4"/>
    </structure>
</PSCID>

Someone with a little coding knowledge can easily customize and adapt the Candidate:validatePSCID()<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_blob_17.0-2Ddev_php_libraries_Candidate.class.inc-23L797&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=mYq2BZomO_PPb8HEzj5YhDzhbmrgFj6Zn4-rUJaHArQ&e=> and Utility class functions<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_blob_17.0-2Ddev_php_libraries_Utility.class.inc-23L377&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=GSuRWnRM11fsR7hdFCuplAdY6XZgjVCVaHj6eHVaMyA&e=> that check for a specific pattern in user-input PSCID formatting.

E.g. you could adapt these functions to check all site abbreviations (or Alias), and could define in config.xml a new <seq> type for project, and add a little code to validate this (across all valid projects).

Also note we're currently adapting the User-Site relationship<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_pull_2468&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=zyBC0cnDG8PWDloVj0J1cI2pVXC-uTfW6Es7nkvG-Bs&e=> for Loris 17.1 to allow users to register a candidate at any site the user is appropriately attached to.

Best,
Christine

--
christine.rogers at mcgill.ca<mailto:christine.rogers at mcgill.ca>
LORIS data systems | loris.ca<https://urldefense.proofpoint.com/v2/url?u=http-3A__loris.ca_&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=Fmbualp3ONKJHGEDB1HZmqMGePP4L3SfI0oPhv8V6GU&e=>
McGill Centre for Integrative Neuroscience | MCIN.ca
McConnell Brain Imaging Centre
Montreal Neurological Institute
McGill University | Montreal | Canada


On Wed, Mar 8, 2017 at 3:59 PM, Michael Joseph> wrote:
Hi all,

I'm setting up a LORIS instance and am having trouble setting up the rules for the PSCID. I'd like the PSCID to have the structure: $projectname_$sitename_4digitcode (eg. AAA01_CDE_0001). Is there a way to do this in the config.xml?

This is what I have currently. Is there a way to call the "Name" column in Project and the "Alias" column in psc to get all the site codes (instead of siteAbbrev which only lets you register candidates from your site)?

<PSCID>
    <generation>user</generation>
    <structure>
        <seq type="????" />
        <seq type="static" "_"/>
        <seq type="set" CDE|FGH|IJK|LMN/>
        <seq type="static" "_"/>
        <seq type="numeric" minLength="4"/>
    </structure>
</PSCID>

Thanks,
Michael

________________________________

This e-mail may contain confidential, personal and/or health information(information which may be subject to legal restrictions on use, retention and/or disclosure) for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies.




________________________________

This e-mail may contain confidential, personal and/or health information(information which may be subject to legal restrictions on use, retention and/or disclosure) for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies.
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From christine.rogers at mcgill.ca  Fri Mar 10 11:41:34 2017
From: christine.rogers at mcgill.ca (Christine Rogers)
Date: Fri, 10 Mar 2017 11:41:34 -0500
Subject: [Loris-dev] Setting up LORIS instance -- help with PSCID
In-Reply-To: <31299C7800456842BFE0898F60FBA89E902720@SKMBXX01.sickkids.ca>
References: <b188b5d9d8774eb383fe5e5627e79dac@BY2PR0301MB0662.namprd03.prod.outlook.com>
	<CALbt7NC_T7UUGkopQgpD5b0BMiMpfsvWOE3imKzBNmU=jwruTg@mail.gmail.com>
	<31299C7800456842BFE0898F60FBA89E902720@SKMBXX01.sickkids.ca>
Message-ID: <CALbt7NDKs37cgJQrHDFp4OV4wBazdLcsNg+46C+Dj_1Z4raHRQ@mail.gmail.com>

Hi Michael,
I can point to some clarifications on these IDs and terms, with links
included to the Wiki documentation:

- PSC (Project Study Centre)
<https://github.com/aces/Loris/wiki/Project-Customization#4-define-study-sites>
means Site or Centre. Sites and their abbreviations are defined in the *psc*
table.
- PSCID
<https://github.com/aces/Loris/wiki/Project-Customization#v-customizable-participant-identifiers>
is the candidate(subject) ID usually assigned/used by data collection site
staff.  For example, a recruiting coordinator would typically refer to a
subject by their PSCID.   It is customizable in config.xml, and is
typically composed of the SiteAbbreviation (from psc table) + a sequence of
digits (e.g. AAA0001)

In contrast, DCCID
<https://github.com/aces/Loris/wiki/Project-Customization#v-customizable-participant-identifiers>
(aka
table column: CandID) is a 6-digit randomized ID generated for each
candidate, and serves as a second unique (and blind) candidate ID, separate
from PSCID.  It can be used as a double-check on the PSCID, and so will be
required in certain contexts (like the Imaging Uploader) to confirm the
exact candidate.

>  And the DCCID could be changed to manual entry of a 4 digit code instead
> of a randomly generated 6 digit code.

The DCCID could theoretically be changed to a 4 digit code, by modifying
all schema tables where CandID is defined as an int(6) field, and all code
which is impacted -- and it also limits candidate registration to 9999
individuals.  For these reasons, we don't recommend this modification.

- Visit label
<https://github.com/aces/Loris/wiki/Project-Customization#iii-visit-labels>:
 is the name given for the subject's visit or timepoint (or session).

In your example, $PSCID_$DCCID_$Visitlabel (used in Imaging file uploads)
-- this string identifies a specific subject-visit, using both IDs to
ensure absolute clarity about the subject/candidate indicated.

To add a project ID in the PSCID (meaning a subject cannot participate in
more than one study/project) -- please see my previous email (below about
customizing the PSCID composition.

Hope this helps,
Christine




On Thu, Mar 9, 2017 at 2:14 PM, Michael Joseph <michael.joseph at sickkids.ca>
wrote:

> Thank you for your reply Christine.
>
> I think I was a little confused earlier by the PSCID and DCCID. From what
> I understand now, the PSCID is static for each site and the DCCID changes
> for each subject. The full subject ID is a combination of
> $PSCID_$DCCID_$Visit_label. So to suit our study, the PSCID could be
> $projectname_$sitename. And the DCCID could be changed to manual entry of a
> 4 digit code instead of a randomly generated 6 digit code. Is this correct?
>
> Thanks,
> Michael
>
> ------------------------------
> *From:* Christine Rogers [christine.rogers at mcgill.ca]
> *Sent:* March 9, 2017 1:42 PM
> *To:* Michael Joseph
> *Cc:* loris-dev at bic.mni.mcgill.ca
> *Subject:* Re: Setting up LORIS instance -- help with PSCID
>
> Hi Michael,
> Thanks for your question - since this is a technical/setup issue, I'm
> responding to you as well as the Loris-dev listserv for any further input
> from the Loris team and community, since another Loris project out there
> may have already implemented the solution you're looking for.
>
> I'm setting up a LORIS instance and am having trouble setting up the rules
>> for the PSCID. I'd like the PSCID to have the structure:
>> $projectname_$sitename_4digitcode (eg. AAA01_CDE_0001). Is there a way
>> to do this in the config.xml?
>> This is what I have currently. Is there a way to call the "Name" column
>> in Project and the "Alias" column in psc to get all the site codes (instead
>> of siteAbbrev which only lets you register candidates from your site)?
>> <PSCID>
>>     <generation>user</generation>
>>     <structure>
>>         <seq type="????" />
>>         <seq type="static" "_"/>
>>         <seq type="set" CDE|FGH|IJK|LMN/>
>>         <seq type="static" "_"/>
>>         <seq type="numeric" minLength="4"/>
>>     </structure>
>> </PSCID>
>
>
> Someone with a little coding knowledge can easily customize and adapt the
> Candidate:validatePSCID()
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_blob_17.0-2Ddev_php_libraries_Candidate.class.inc-23L797&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=mYq2BZomO_PPb8HEzj5YhDzhbmrgFj6Zn4-rUJaHArQ&e=>
> and Utility class functions
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_blob_17.0-2Ddev_php_libraries_Utility.class.inc-23L377&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=GSuRWnRM11fsR7hdFCuplAdY6XZgjVCVaHj6eHVaMyA&e=>
> that check for a specific pattern in user-input PSCID formatting.
>
> E.g. you could adapt these functions to check all site abbreviations (or
> Alias), and could define in config.xml a new <seq> type for project, and
> add a little code to validate this (across all valid projects).
>
> Also note we're currently adapting the User-Site relationship
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_pull_2468&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=zyBC0cnDG8PWDloVj0J1cI2pVXC-uTfW6Es7nkvG-Bs&e=> for
> Loris 17.1 to allow users to register a candidate at any site the user is
> appropriately attached to.
>
> Best,
> Christine
>
> --
> christine.rogers at mcgill.ca
> LORIS data systems | loris.ca
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__loris.ca_&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=Fmbualp3ONKJHGEDB1HZmqMGePP4L3SfI0oPhv8V6GU&e=>
> McGill Centre for Integrative Neuroscience | MCIN.ca
> McConnell Brain Imaging Centre
> Montreal Neurological Institute
> McGill University | Montreal | Canada
>
>
> On Wed, Mar 8, 2017 at 3:59 PM, Michael Joseph> wrote:
>
>> Hi all,
>>
>> I'm setting up a LORIS instance and am having trouble setting up the
>> rules for the PSCID. I'd like the PSCID to have the structure:
>> $projectname_$sitename_4digitcode (eg. AAA01_CDE_0001). Is there a way
>> to do this in the config.xml?
>>
>> This is what I have currently. Is there a way to call the "Name" column
>> in Project and the "Alias" column in psc to get all the site codes (instead
>> of siteAbbrev which only lets you register candidates from your site)?
>>
>> <PSCID>
>>     <generation>user</generation>
>>     <structure>
>>         <seq type="????" />
>>         <seq type="static" "_"/>
>>         <seq type="set" CDE|FGH|IJK|LMN/>
>>         <seq type="static" "_"/>
>>         <seq type="numeric" minLength="4"/>
>>     </structure>
>> </PSCID>
>>
>> Thanks,
>> Michael
>>
>> ------------------------------
>>
>> This e-mail may contain confidential, personal and/or health
>> information(information which may be subject to legal restrictions on use,
>> retention and/or disclosure) for the sole use of the intended recipient.
>> Any review or distribution by anyone other than the person for whom it was
>> originally intended is strictly prohibited. If you have received this
>> e-mail in error, please contact the sender and delete all copies.
>>
>
>
>
>
> ------------------------------
>
> This e-mail may contain confidential, personal and/or health
> information(information which may be subject to legal restrictions on use,
> retention and/or disclosure) for the sole use of the intended recipient.
> Any review or distribution by anyone other than the person for whom it was
> originally intended is strictly prohibited. If you have received this
> e-mail in error, please contact the sender and delete all copies.
>
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
>


-- 

christine.rogers at mcgill.ca
LORIS data systems | loris.ca
McGill Centre for Integrative Neuroscience | MCIN.ca
McConnell Brain Imaging Centre
Montreal Neurological Institute
McGill University | Montreal | Canada
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From michael.joseph at sickkids.ca  Fri Mar 10 12:43:17 2017
From: michael.joseph at sickkids.ca (Michael Joseph)
Date: Fri, 10 Mar 2017 17:43:17 +0000
Subject: [Loris-dev] Setting up LORIS instance -- help with PSCID
In-Reply-To: <CALbt7NDKs37cgJQrHDFp4OV4wBazdLcsNg+46C+Dj_1Z4raHRQ@mail.gmail.com>
References: <b188b5d9d8774eb383fe5e5627e79dac@BY2PR0301MB0662.namprd03.prod.outlook.com>
	<CALbt7NC_T7UUGkopQgpD5b0BMiMpfsvWOE3imKzBNmU=jwruTg@mail.gmail.com>
	<31299C7800456842BFE0898F60FBA89E902720@SKMBXX01.sickkids.ca>,
	<CALbt7NDKs37cgJQrHDFp4OV4wBazdLcsNg+46C+Dj_1Z4raHRQ@mail.gmail.com>
Message-ID: <31299C7800456842BFE0898F60FBA89E90274E@SKMBXX01.sickkids.ca>

Hi Christine,

Yes, this helps a lot. I wasn't quite sure what the reasoning behind the DCCID was before. A lot of our subjects already have Subject IDs and I see that it's best to use the PSCID for these IDs and add the DCCID as a unique candidate ID.

Thanks,
Michael


________________________________
From: Christine Rogers [christine.rogers at mcgill.ca]
Sent: March 10, 2017 11:41 AM
To: Michael Joseph
Cc: loris-dev at bic.mni.mcgill.ca
Subject: Re: [Loris-dev] Setting up LORIS instance -- help with PSCID

Hi Michael,
I can point to some clarifications on these IDs and terms, with links included to the Wiki documentation:

- PSC (Project Study Centre)<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_wiki_Project-2DCustomization-234-2Ddefine-2Dstudy-2Dsites&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=0mh9q0Bwg9g-Q1zZJZybWOG7pWh_SaBrNFE5HHR0M5Y&s=cNxjd_dwL6_gbaVE-Rwwa9L9JGELq3eYpwv769_JdEY&e=> means Site or Centre. Sites and their abbreviations are defined in the psc table.
- PSCID<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_wiki_Project-2DCustomization-23v-2Dcustomizable-2Dparticipant-2Didentifiers&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=0mh9q0Bwg9g-Q1zZJZybWOG7pWh_SaBrNFE5HHR0M5Y&s=Co0LNZuCc3HDovMDuciDVPZDdPxK5CruFd4xD0XXKrs&e=> is the candidate(subject) ID usually assigned/used by data collection site staff.  For example, a recruiting coordinator would typically refer to a subject by their PSCID.   It is customizable in config.xml, and is typically composed of the SiteAbbreviation (from psc table) + a sequence of digits (e.g. AAA0001)

In contrast, DCCID<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_wiki_Project-2DCustomization-23v-2Dcustomizable-2Dparticipant-2Didentifiers&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=0mh9q0Bwg9g-Q1zZJZybWOG7pWh_SaBrNFE5HHR0M5Y&s=Co0LNZuCc3HDovMDuciDVPZDdPxK5CruFd4xD0XXKrs&e=> (aka table column: CandID) is a 6-digit randomized ID generated for each candidate, and serves as a second unique (and blind) candidate ID, separate from PSCID.  It can be used as a double-check on the PSCID, and so will be required in certain contexts (like the Imaging Uploader) to confirm the exact candidate.
 And the DCCID could be changed to manual entry of a 4 digit code instead of a randomly generated 6 digit code.
The DCCID could theoretically be changed to a 4 digit code, by modifying all schema tables where CandID is defined as an int(6) field, and all code which is impacted -- and it also limits candidate registration to 9999 individuals.  For these reasons, we don't recommend this modification.

- Visit label<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_wiki_Project-2DCustomization-23iii-2Dvisit-2Dlabels&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=0mh9q0Bwg9g-Q1zZJZybWOG7pWh_SaBrNFE5HHR0M5Y&s=EC01HUkzlG3aXSEY3wy68GP2_x88Fk5m-UmI7h8usTQ&e=>:  is the name given for the subject's visit or timepoint (or session).

In your example, $PSCID_$DCCID_$Visitlabel (used in Imaging file uploads) -- this string identifies a specific subject-visit, using both IDs to ensure absolute clarity about the subject/candidate indicated.

To add a project ID in the PSCID (meaning a subject cannot participate in more than one study/project) -- please see my previous email (below about customizing the PSCID composition.

Hope this helps,
Christine




On Thu, Mar 9, 2017 at 2:14 PM, Michael Joseph <michael.joseph at sickkids.ca<mailto:michael.joseph at sickkids.ca>> wrote:
Thank you for your reply Christine.

I think I was a little confused earlier by the PSCID and DCCID. From what I understand now, the PSCID is static for each site and the DCCID changes for each subject. The full subject ID is a combination of $PSCID_$DCCID_$Visit_label. So to suit our study, the PSCID could be $projectname_$sitename. And the DCCID could be changed to manual entry of a 4 digit code instead of a randomly generated 6 digit code. Is this correct?

Thanks,
Michael

________________________________
From: Christine Rogers [christine.rogers at mcgill.ca<mailto:christine.rogers at mcgill.ca>]
Sent: March 9, 2017 1:42 PM
To: Michael Joseph
Cc: loris-dev at bic.mni.mcgill.ca<mailto:loris-dev at bic.mni.mcgill.ca>
Subject: Re: Setting up LORIS instance -- help with PSCID

Hi Michael,
Thanks for your question - since this is a technical/setup issue, I'm responding to you as well as the Loris-dev listserv for any further input from the Loris team and community, since another Loris project out there may have already implemented the solution you're looking for.

I'm setting up a LORIS instance and am having trouble setting up the rules for the PSCID. I'd like the PSCID to have the structure: $projectname_$sitename_4digitcode (eg. AAA01_CDE_0001). Is there a way to do this in the config.xml?
This is what I have currently. Is there a way to call the "Name" column in Project and the "Alias" column in psc to get all the site codes (instead of siteAbbrev which only lets you register candidates from your site)?
<PSCID>
    <generation>user</generation>
    <structure>
        <seq type="????" />
        <seq type="static" "_"/>
        <seq type="set" CDE|FGH|IJK|LMN/>
        <seq type="static" "_"/>
        <seq type="numeric" minLength="4"/>
    </structure>
</PSCID>

Someone with a little coding knowledge can easily customize and adapt the Candidate:validatePSCID()<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_blob_17.0-2Ddev_php_libraries_Candidate.class.inc-23L797&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=mYq2BZomO_PPb8HEzj5YhDzhbmrgFj6Zn4-rUJaHArQ&e=> and Utility class functions<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_blob_17.0-2Ddev_php_libraries_Utility.class.inc-23L377&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=GSuRWnRM11fsR7hdFCuplAdY6XZgjVCVaHj6eHVaMyA&e=> that check for a specific pattern in user-input PSCID formatting.

E.g. you could adapt these functions to check all site abbreviations (or Alias), and could define in config.xml a new <seq> type for project, and add a little code to validate this (across all valid projects).

Also note we're currently adapting the User-Site relationship<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_pull_2468&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=zyBC0cnDG8PWDloVj0J1cI2pVXC-uTfW6Es7nkvG-Bs&e=> for Loris 17.1 to allow users to register a candidate at any site the user is appropriately attached to.

Best,
Christine

--
christine.rogers at mcgill.ca<mailto:christine.rogers at mcgill.ca>
LORIS data systems | loris.ca<https://urldefense.proofpoint.com/v2/url?u=http-3A__loris.ca_&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=voTamHhVFeA68lzguNPR1MFyiko8C7fz0dVJ7bvvBGk&s=Fmbualp3ONKJHGEDB1HZmqMGePP4L3SfI0oPhv8V6GU&e=>
McGill Centre for Integrative Neuroscience | MCIN.ca
McConnell Brain Imaging Centre
Montreal Neurological Institute
McGill University | Montreal | Canada


On Wed, Mar 8, 2017 at 3:59 PM, Michael Joseph> wrote:
Hi all,

I'm setting up a LORIS instance and am having trouble setting up the rules for the PSCID. I'd like the PSCID to have the structure: $projectname_$sitename_4digitcode (eg. AAA01_CDE_0001). Is there a way to do this in the config.xml?

This is what I have currently. Is there a way to call the "Name" column in Project and the "Alias" column in psc to get all the site codes (instead of siteAbbrev which only lets you register candidates from your site)?

<PSCID>
    <generation>user</generation>
    <structure>
        <seq type="????" />
        <seq type="static" "_"/>
        <seq type="set" CDE|FGH|IJK|LMN/>
        <seq type="static" "_"/>
        <seq type="numeric" minLength="4"/>
    </structure>
</PSCID>

Thanks,
Michael

________________________________

This e-mail may contain confidential, personal and/or health information(information which may be subject to legal restrictions on use, retention and/or disclosure) for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies.




________________________________

This e-mail may contain confidential, personal and/or health information(information which may be subject to legal restrictions on use, retention and/or disclosure) for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies.

_______________________________________________
Loris-dev mailing list
Loris-dev at bic.mni.mcgill.ca<mailto:Loris-dev at bic.mni.mcgill.ca>
http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bic.mni.mcgill.ca_mailman_listinfo_loris-2Ddev&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=0mh9q0Bwg9g-Q1zZJZybWOG7pWh_SaBrNFE5HHR0M5Y&s=XpgI0SxuShsZUlhS6ZIMvYqJDBEQ1oG2tyAmi0sCaSw&e=>




--

christine.rogers at mcgill.ca<mailto:christine.rogers at mcgill.ca>
LORIS data systems | loris.ca<https://urldefense.proofpoint.com/v2/url?u=http-3A__loris.ca&d=DQMFaQ&c=Dvjge31PR3JZstzk2paJYiflTxRSxp35GBhsbHdd2Zw&r=tKjGFUipnzrGVnXuVE1v6Q1Z3FG_u0KhQBt7AXF9Blk&m=0mh9q0Bwg9g-Q1zZJZybWOG7pWh_SaBrNFE5HHR0M5Y&s=aS6uPrPXASkauaM2mOUIA8G7dkBz9_S_v3uNAI0qOlw&e=>
McGill Centre for Integrative Neuroscience | MCIN.ca
McConnell Brain Imaging Centre
Montreal Neurological Institute
McGill University | Montreal | Canada

________________________________

This e-mail may contain confidential, personal and/or health information(information which may be subject to legal restrictions on use, retention and/or disclosure) for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies.
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From um4r12 at gmail.com  Mon Mar 13 17:08:00 2017
From: um4r12 at gmail.com (Umer Muhammad)
Date: Mon, 13 Mar 2017 15:08:00 -0600
Subject: [Loris-dev] Fwd: Integrating CBrain with LORIS
In-Reply-To: <CALk1_FUnP1LWAxGOU-q6vC8otSxVq2VMzDh=R2wDbsT=s8K7ig@mail.gmail.com>
References: <CALk1_FUnP1LWAxGOU-q6vC8otSxVq2VMzDh=R2wDbsT=s8K7ig@mail.gmail.com>
Message-ID: <CALk1_FUpHbpXWc2FyPLe7V5NJzb7YgKvWCp-wdse0m4WxqrFPA@mail.gmail.com>

Hi,

I was recently set up with an account for CBrain.
We are using the Imaging Module on LORIS, and we were wondering if it is
possible to be able to execute post-processing scripts through CBrain (ex.
automatically run Recon-All after the Imaging Module converts uploaded data
into .mnc files). Also, is it possible to use our own tools through CBrain.
If so, do we have control over who has access to the toolbox(es)?

Thanks,

Muhammad
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From srikanthraov9 at gmail.com  Fri Mar 17 12:10:12 2017
From: srikanthraov9 at gmail.com (Sreekanth V)
Date: Fri, 17 Mar 2017 21:40:12 +0530
Subject: [Loris-dev] Request
Message-ID: <CAAt8GcxtBLXVXFfD_agROiUmJYFcK2qH1zSxZTkjPb_PCmRaMQ@mail.gmail.com>

Hi,

     My self srikanth and i am working as Project Lead  while going through
some requirement i understand that Loris is suitable for my requirement but
i have some queries can you please help me out.
      1. Is there mobile app development, as per requirement  survey is
done in rural areas and data will be stored in offline when he comes to
online it will fetch to server.
      2. How to deploy the web application in the cloud?
      3.can any share how to develop application

Thanks&Regards,
V.Srikanth,
+91-9962677939.
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From christine.rogers at mcgill.ca  Fri Mar 17 13:26:22 2017
From: christine.rogers at mcgill.ca (Christine Rogers)
Date: Fri, 17 Mar 2017 13:26:22 -0400
Subject: [Loris-dev] Fwd: Integrating CBrain with LORIS
In-Reply-To: <CALk1_FUpHbpXWc2FyPLe7V5NJzb7YgKvWCp-wdse0m4WxqrFPA@mail.gmail.com>
References: <CALk1_FUnP1LWAxGOU-q6vC8otSxVq2VMzDh=R2wDbsT=s8K7ig@mail.gmail.com>
	<CALk1_FUpHbpXWc2FyPLe7V5NJzb7YgKvWCp-wdse0m4WxqrFPA@mail.gmail.com>
Message-ID: <CALbt7NB2gQbQvYYRQWWeD5WWWxRL_=8iiznQodTKcTdkjc62yA@mail.gmail.com>

Hi Muhammad,
Our sister group, the CBRAIN team, has helped resolve your key questions,
and we're glad to understand that post-processing your Loris-hosted data
seems to be working nicely on CBRAIN for you.
Best,
Christine

On Mon, Mar 13, 2017 at 5:08 PM, Umer Muhammad <um4r12 at gmail.com> wrote:

> Hi,
>
> I was recently set up with an account for CBrain.
> We are using the Imaging Module on LORIS, and we were wondering if it is
> possible to be able to execute post-processing scripts through CBrain (ex.
> automatically run Recon-All after the Imaging Module converts uploaded data
> into .mnc files). Also, is it possible to use our own tools through CBrain.
> If so, do we have control over who has access to the toolbox(es)?
>
> Thanks,
>
> Muhammad
>
>
>
>
>
>
>
>
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
>


-- 

christine.rogers at mcgill.ca
LORIS data systems | loris.ca
McGill Centre for Integrative Neuroscience | MCIN.ca
McConnell Brain Imaging Centre
Montreal Neurological Institute
McGill University | Montreal | Canada
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From jordan.stirling at mail.mcgill.ca  Tue Mar 21 14:12:04 2017
From: jordan.stirling at mail.mcgill.ca (Jordan Stirling, Mr)
Date: Tue, 21 Mar 2017 18:12:04 +0000
Subject: [Loris-dev] Request
In-Reply-To: <CAAt8GcxtBLXVXFfD_agROiUmJYFcK2qH1zSxZTkjPb_PCmRaMQ@mail.gmail.com>
References: <CAAt8GcxtBLXVXFfD_agROiUmJYFcK2qH1zSxZTkjPb_PCmRaMQ@mail.gmail.com>
Message-ID: <5312A01E-FE5A-44D9-8B9C-201694F4513A@mail.mcgill.ca>

Hi Srikanth,

Thanks for you interest in LORIS. Currently at this point in time there is no development on a mobile application of LORIS, or in the capabilities of offline data capture. If you were interested in developing a specific application to be able to capture data offline is two either use native web technologies such as local storage and app manifest or use our API to be the bridge between LORIS and a mobile application. Here's a link to our API documentation (https://github.com/aces/Loris/blob/17.1-dev/docs/API/LorisRESTAPI.md).

As for your second question, I'm not quite sure what you mean. Are you looking on how to host a LORIS instance online? If that's the case you could use a service such as Amazon Web Service to host your instance.

About your last question, are you looking to develop an application for offline data capture, or for developing for the LORIS code base? If the latter, I can go into more detail about our github pull request protocol.

Hope this answers your question, if no feel free to send any follow up questions you'd like.

Thanks,

Jordan

Sent from my iPhone

On Mar 17, 2017, at 12:11 PM, Sreekanth V <srikanthraov9 at gmail.com<mailto:srikanthraov9 at gmail.com>> wrote:

Hi,

     My self srikanth and i am working as Project Lead  while going through some requirement i understand that Loris is suitable for my requirement but i have some queries can you please help me out.
      1. Is there mobile app development, as per requirement  survey is done in rural areas and data will be stored in offline when he comes to online it will fetch to server.
      2. How to deploy the web application in the cloud?
      3.can any share how to develop application

Thanks&Regards,
V.Srikanth,
+91-9962677939.
_______________________________________________
Loris-dev mailing list
Loris-dev at bic.mni.mcgill.ca<mailto:Loris-dev at bic.mni.mcgill.ca>
http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
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From iris.rodriguez at cneuro.edu.cu  Tue Mar 21 15:36:08 2017
From: iris.rodriguez at cneuro.edu.cu (=?iso-8859-1?Q?Iris_Rodr=EDguez_Gil?=)
Date: Tue, 21 Mar 2017 14:36:08 -0500
Subject: [Loris-dev] HELP!!
Message-ID: <C3A14E086354C04B8DB16023948F98BA6D410E4F3C@exchange.cneuro.edu.cu>

Hi  to the Loris community,

I'm uploading DICOM images using the DicomTar.pl and tarchiveLoader pipeline, but tarchiveLoader
prompts the errors that I ?ve attached in the .rtf file.

If someone could help me. I would appreciate it.

Thanks,
Iris.


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From david.macfarlane2 at mcgill.ca  Wed Mar 22 09:52:03 2017
From: david.macfarlane2 at mcgill.ca (David MacFarlane, Mr)
Date: Wed, 22 Mar 2017 13:52:03 +0000
Subject: [Loris-dev] HELP!!
In-Reply-To: <C3A14E086354C04B8DB16023948F98BA6D410E4F3C@exchange.cneuro.edu.cu>
References: <C3A14E086354C04B8DB16023948F98BA6D410E4F3C@exchange.cneuro.edu.cu>
Message-ID: <CO2PR03MB23891FE68FBB4D2BC03CAA89A83C0@CO2PR03MB2389.namprd03.prod.outlook.com>

Hi Iris,


It's hard to tell just from the log file, but it looks to me like either your MySQL schema isn't the same as your LORIS code, or your dicom archive doesn't have the patientname set correctly.


The MRI processing scripts expect the patient name to be of the form pscid_candid_visitlabel.  The error "PSCID cannot be null" suggests to me that it's not extracting that correctly.


With something going wrong that early in the process, it's hard to tell if the other errors are a result of that or something else that's wrong.


- Dave



________________________________
From: loris-dev-bounces at bic.mni.mcgill.ca <loris-dev-bounces at bic.mni.mcgill.ca> on behalf of Iris Rodr?guez Gil <iris.rodriguez at cneuro.edu.cu>
Sent: March 21, 2017 3:36:08 PM
To: Loris-dev at bic.mni.mcgill.ca
Subject: [Loris-dev] HELP!!

Hi  to the Loris community,

I'm uploading DICOM images using the DicomTar.pl and tarchiveLoader pipeline, but tarchiveLoader
prompts the errors that I ?ve attached in the .rtf file.

If someone could help me. I would appreciate it.

Thanks,
Iris.


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From carolina.mak3 at gmail.com  Mon Mar 27 18:22:32 2017
From: carolina.mak3 at gmail.com (Carolina Makowski)
Date: Mon, 27 Mar 2017 15:22:32 -0700
Subject: [Loris-dev] Fwd: errors in installation of LORIS
Message-ID: <CAHA-=rLY_3K8uo2Uv7Wp80_XV9SPAaQBv4qXcOySXT=GbX6AQQ@mail.gmail.com>

Hi there,
We are running into some issues in installing an instance of LORIS at UCSD.
Please see screenshot and info below with information about MySQL/PHP/OS
version used for the install script and the resulting errors.

Let us know if there is a particular error here that stands out and if we
can provide more info.


Thanks,
Carolina

---------- Forwarded message ----------
From: Bartsch, Hauke <hbartsch at ucsd.edu>
Date: Mon, Mar 27, 2017 at 3:11 PM
Subject: Re: errors in installation of LORIS
To: Carolina Makowski <carolina.mak3 at gmail.com>
Cc: "samirdas99 at gmail.com" <samirdas99 at gmail.com>


Hi Carolina,

I am running into some problems with the mysql setup. Is there a separate
install script I can run to create the tables? Maybe I should just start
over?

Mysql 5.7,
php7.0
Ubuntu 16.04LTS

  Hauke




On Mar 27, 2017, at 11:17 AM, Carolina Makowski <carolina.mak3 at gmail.com>
wrote:

see message from Samir below, seems to be that all of these are just
warning messages - we can discuss later this afternoon as well, I'll be at
Atkinson Hall at 1:00p.m.

See you soon,
Carolina

---------- Forwarded message ----------
From: Samir Das <samirdas99 at gmail.com>
Date: Mon, Mar 27, 2017 at 11:14 AM
Subject: Re: errors in installation of LORIS
To: Carolina Makowski <carolina.mak3 at gmail.com>
Cc: Christine Rogers <mni.crogers at gmail.com>


I think that these are all just warnings. We should definitely fix them. It
happens as version of software (PHP for example) changes. Is the
installation working? Or are these warnings causing it to fail?

It might be a good idea to send this to loris-dev mailing list so that
everyone can see and then we can tackle them. Thanks.

Samir Das

On Mon, Mar 27, 2017 at 2:07 PM, Carolina Makowski <carolina.mak3 at gmail.com>
wrote:

> Hi guys,
> Hauke is running into some errors with the installation of LORIS. Do any
> of these errors ring a bell to you? Let me know if you prefer that I
> forward this to the LORIS help mailing list.
>
> Thanks!
>
> Carolina
>
> ---------- Forwarded message ----------
> From: Bartsch, Hauke <hbartsch at ucsd.edu>
> Date: Mon, Mar 27, 2017 at 10:47 AM
> Subject: Re: setting up LORIS- Github wiki page
> To: Carolina Makowski <carolina.mak3 at gmail.com>
>
>
> Still all kinds of error messages with the installation:
>
> <PastedGraphic-3.png>
>
>
> On Mar 27, 2017, at 10:45 AM, Bartsch, Hauke <hbartsch at ucsd.edu> wrote:
>
>
>     http://169.228.56.161/
>
> User: lorisadmin
> Pw: ucsd!1234
>
>   Hauke
>
> On Mar 24, 2017, at 3:47 PM, Carolina Makowski <carolina.mak3 at gmail.com>
> wrote:
>
> https://github.com/aces/Loris/wiki/Setup
>
> Will get back to you as soon as I hear from Christine regarding
> REDCap-LORIS hooks.
> Looking forward to seeing how this turns out!
>
> Cheers,
> Carolina
>
>
>
>
>
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From david.macfarlane2 at mcgill.ca  Tue Mar 28 09:56:38 2017
From: david.macfarlane2 at mcgill.ca (David MacFarlane, Mr)
Date: Tue, 28 Mar 2017 13:56:38 +0000
Subject: [Loris-dev] Fwd: errors in installation of LORIS
In-Reply-To: <CAHA-=rLY_3K8uo2Uv7Wp80_XV9SPAaQBv4qXcOySXT=GbX6AQQ@mail.gmail.com>
References: <CAHA-=rLY_3K8uo2Uv7Wp80_XV9SPAaQBv4qXcOySXT=GbX6AQQ@mail.gmail.com>
Message-ID: <CO2PR03MB238936C173F731F91CFB265DA8320@CO2PR03MB2389.namprd03.prod.outlook.com>

Hi Carolina/Hauke,


Please ensure that you change your password ASAP as it's included below in this thread in a plain text email.


As far as the radiology_review table goes, the table isn't part of the core LORIS schema because it's an instrument and each project has unique/different/customized instruments. There's a sample radiology_review instrument in docs/instruments/NDB_BVL_Instrument_radiology_review.class.inc. (There's also a sample mri_parameter_form instrument there, which some other modules sometimes depend on.) I believe instructions for how to install an instrument should be on the wiki.

________________________________
From: loris-dev-bounces at bic.mni.mcgill.ca <loris-dev-bounces at bic.mni.mcgill.ca> on behalf of Carolina Makowski <carolina.mak3 at gmail.com>
Sent: March 27, 2017 6:22:32 PM
To: loris-dev at bic.mni.mcgill.ca
Cc: Bartsch, Hauke
Subject: [Loris-dev] Fwd: errors in installation of LORIS

Hi there,
We are running into some issues in installing an instance of LORIS at UCSD. Please see screenshot and info below with information about MySQL/PHP/OS version used for the install script and the resulting errors.

Let us know if there is a particular error here that stands out and if we can provide more info.


Thanks,
Carolina

---------- Forwarded message ----------
From: Bartsch, Hauke <hbartsch at ucsd.edu<mailto:hbartsch at ucsd.edu>>
Date: Mon, Mar 27, 2017 at 3:11 PM
Subject: Re: errors in installation of LORIS
To: Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>>
Cc: "samirdas99 at gmail.com<mailto:samirdas99 at gmail.com>" <samirdas99 at gmail.com<mailto:samirdas99 at gmail.com>>


Hi Carolina,

I am running into some problems with the mysql setup. Is there a separate install script I can run to create the tables? Maybe I should just start over?

Mysql 5.7,
php7.0
Ubuntu 16.04LTS

  Hauke


[cid:26347591-0EED-41EA-9372-FD63CF499636 at ucsd.edu]


On Mar 27, 2017, at 11:17 AM, Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>> wrote:

see message from Samir below, seems to be that all of these are just warning messages - we can discuss later this afternoon as well, I'll be at Atkinson Hall at 1:00p.m.

See you soon,
Carolina

---------- Forwarded message ----------
From: Samir Das <samirdas99 at gmail.com<mailto:samirdas99 at gmail.com>>
Date: Mon, Mar 27, 2017 at 11:14 AM
Subject: Re: errors in installation of LORIS
To: Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>>
Cc: Christine Rogers <mni.crogers at gmail.com<mailto:mni.crogers at gmail.com>>


I think that these are all just warnings. We should definitely fix them. It happens as version of software (PHP for example) changes. Is the installation working? Or are these warnings causing it to fail?

It might be a good idea to send this to loris-dev mailing list so that everyone can see and then we can tackle them. Thanks.

Samir Das

On Mon, Mar 27, 2017 at 2:07 PM, Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>> wrote:
Hi guys,
Hauke is running into some errors with the installation of LORIS. Do any of these errors ring a bell to you? Let me know if you prefer that I forward this to the LORIS help mailing list.

Thanks!

Carolina

---------- Forwarded message ----------
From: Bartsch, Hauke <hbartsch at ucsd.edu<mailto:hbartsch at ucsd.edu>>
Date: Mon, Mar 27, 2017 at 10:47 AM
Subject: Re: setting up LORIS- Github wiki page
To: Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>>


Still all kinds of error messages with the installation:

<PastedGraphic-3.png>


On Mar 27, 2017, at 10:45 AM, Bartsch, Hauke <hbartsch at ucsd.edu<mailto:hbartsch at ucsd.edu>> wrote:


    http://169.228.56.161/

User: lorisadmin
Pw: ucsd!1234

  Hauke

On Mar 24, 2017, at 3:47 PM, Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>> wrote:

https://github.com/aces/Loris/wiki/Setup

Will get back to you as soon as I hear from Christine regarding REDCap-LORIS hooks.
Looking forward to seeing how this turns out!

Cheers,
Carolina







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From zia.mohades at gmail.com  Tue Mar 28 09:57:30 2017
From: zia.mohades at gmail.com (zia mohades)
Date: Tue, 28 Mar 2017 09:57:30 -0400
Subject: [Loris-dev] Fwd: errors in installation of LORIS
In-Reply-To: <CAHA-=rLY_3K8uo2Uv7Wp80_XV9SPAaQBv4qXcOySXT=GbX6AQQ@mail.gmail.com>
References: <CAHA-=rLY_3K8uo2Uv7Wp80_XV9SPAaQBv4qXcOySXT=GbX6AQQ@mail.gmail.com>
Message-ID: <CANSo6t+7UCnY_X2eCZM01ohd+iwzGEcq6-0qwYGPO67a+5iLjA@mail.gmail.com>

Hi Carolina,

You are missing the radiology_review table. You need to create the table by
running the "radiology_review.sql" patch. Should be under
/path-to-your-project/docs/instruments/radiology_review.sql

Hope this helps.

Best regards,


Zia Mohaddes
CCNA <http://ccna-ccnv.ca/en/> Data Manager
Montreal Neurological Institute
McGill University
Phone: (514)-398-5257 <(514)%20398-5257>

---------- Forwarded message ----------
From: Carolina Makowski <carolina.mak3 at gmail.com>
Date: Mon, Mar 27, 2017 at 6:22 PM
Subject: [Loris-dev] Fwd: errors in installation of LORIS
To: loris-dev at bic.mni.mcgill.ca
Cc: "Bartsch, Hauke" <hbartsch at ucsd.edu>


Hi there,
We are running into some issues in installing an instance of LORIS at UCSD.
Please see screenshot and info below with information about MySQL/PHP/OS
version used for the install script and the resulting errors.

Let us know if there is a particular error here that stands out and if we
can provide more info.


Thanks,
Carolina

---------- Forwarded message ----------
From: Bartsch, Hauke <hbartsch at ucsd.edu>
Date: Mon, Mar 27, 2017 at 3:11 PM
Subject: Re: errors in installation of LORIS
To: Carolina Makowski <carolina.mak3 at gmail.com>
Cc: "samirdas99 at gmail.com" <samirdas99 at gmail.com>


Hi Carolina,

I am running into some problems with the mysql setup. Is there a separate
install script I can run to create the tables? Maybe I should just start
over?

Mysql 5.7,
php7.0
Ubuntu 16.04LTS

  Hauke




On Mar 27, 2017, at 11:17 AM, Carolina Makowski <carolina.mak3 at gmail.com>
wrote:

see message from Samir below, seems to be that all of these are just
warning messages - we can discuss later this afternoon as well, I'll be at
Atkinson Hall at 1:00p.m.

See you soon,
Carolina

---------- Forwarded message ----------
From: Samir Das <samirdas99 at gmail.com>
Date: Mon, Mar 27, 2017 at 11:14 AM
Subject: Re: errors in installation of LORIS
To: Carolina Makowski <carolina.mak3 at gmail.com>
Cc: Christine Rogers <mni.crogers at gmail.com>


I think that these are all just warnings. We should definitely fix them. It
happens as version of software (PHP for example) changes. Is the
installation working? Or are these warnings causing it to fail?

It might be a good idea to send this to loris-dev mailing list so that
everyone can see and then we can tackle them. Thanks.

Samir Das

On Mon, Mar 27, 2017 at 2:07 PM, Carolina Makowski <carolina.mak3 at gmail.com>
wrote:

> Hi guys,
> Hauke is running into some errors with the installation of LORIS. Do any
> of these errors ring a bell to you? Let me know if you prefer that I
> forward this to the LORIS help mailing list.
>
> Thanks!
>
> Carolina
>
> ---------- Forwarded message ----------
> From: Bartsch, Hauke <hbartsch at ucsd.edu>
> Date: Mon, Mar 27, 2017 at 10:47 AM
> Subject: Re: setting up LORIS- Github wiki page
> To: Carolina Makowski <carolina.mak3 at gmail.com>
>
>
> Still all kinds of error messages with the installation:
>
> <PastedGraphic-3.png>
>
>
> On Mar 27, 2017, at 10:45 AM, Bartsch, Hauke <hbartsch at ucsd.edu> wrote:
>
>
>     http://169.228.56.161/
>
> User: lorisadmin
> Pw: ucsd!1234
>
>   Hauke
>
> On Mar 24, 2017, at 3:47 PM, Carolina Makowski <carolina.mak3 at gmail.com>
> wrote:
>
> https://github.com/aces/Loris/wiki/Setup
>
> Will get back to you as soon as I hear from Christine regarding
> REDCap-LORIS hooks.
> Looking forward to seeing how this turns out!
>
> Cheers,
> Carolina
>
>
>
>
>




_______________________________________________
Loris-dev mailing list
Loris-dev at bic.mni.mcgill.ca
http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev


?
?
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From hbartsch at ucsd.edu  Tue Mar 28 11:44:46 2017
From: hbartsch at ucsd.edu (Bartsch, Hauke)
Date: Tue, 28 Mar 2017 15:44:46 +0000
Subject: [Loris-dev] Fwd: errors in installation of LORIS
In-Reply-To: <CANSo6t+7UCnY_X2eCZM01ohd+iwzGEcq6-0qwYGPO67a+5iLjA@mail.gmail.com>
References: <CAHA-=rLY_3K8uo2Uv7Wp80_XV9SPAaQBv4qXcOySXT=GbX6AQQ@mail.gmail.com>
	<CANSo6t+7UCnY_X2eCZM01ohd+iwzGEcq6-0qwYGPO67a+5iLjA@mail.gmail.com>
Message-ID: <5F3FCD38-839F-4348-B300-F9CA58446FB0@ucsd.edu>

Hi David, Zia,

I did run the example instrument sql and the page shows up now. Thank you for your help!

  Hauke

On Mar 28, 2017, at 6:57 AM, zia mohades <zia.mohades at gmail.com<mailto:zia.mohades at gmail.com>> wrote:

Hi Carolina,

You are missing the radiology_review table. You need to create the table by running the "radiology_review.sql" patch. Should be under /path-to-your-project/docs/instruments/radiology_review.sql

Hope this helps.

Best regards,


Zia Mohaddes
CCNA<http://ccna-ccnv.ca/en/> Data Manager
Montreal Neurological Institute
McGill University
Phone: (514)-398-5257<tel:(514)%20398-5257>

---------- Forwarded message ----------
From: Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>>
Date: Mon, Mar 27, 2017 at 6:22 PM
Subject: [Loris-dev] Fwd: errors in installation of LORIS
To: loris-dev at bic.mni.mcgill.ca<mailto:loris-dev at bic.mni.mcgill.ca>
Cc: "Bartsch, Hauke" <hbartsch at ucsd.edu<mailto:hbartsch at ucsd.edu>>


Hi there,
We are running into some issues in installing an instance of LORIS at UCSD. Please see screenshot and info below with information about MySQL/PHP/OS version used for the install script and the resulting errors.

Let us know if there is a particular error here that stands out and if we can provide more info.


Thanks,
Carolina

---------- Forwarded message ----------
From: Bartsch, Hauke <hbartsch at ucsd.edu<mailto:hbartsch at ucsd.edu>>
Date: Mon, Mar 27, 2017 at 3:11 PM
Subject: Re: errors in installation of LORIS
To: Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>>
Cc: "samirdas99 at gmail.com<mailto:samirdas99 at gmail.com>" <samirdas99 at gmail.com<mailto:samirdas99 at gmail.com>>


Hi Carolina,

I am running into some problems with the mysql setup. Is there a separate install script I can run to create the tables? Maybe I should just start over?

Mysql 5.7,
php7.0
Ubuntu 16.04LTS

  Hauke


<PastedGraphic-2.png>


On Mar 27, 2017, at 11:17 AM, Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>> wrote:

see message from Samir below, seems to be that all of these are just warning messages - we can discuss later this afternoon as well, I'll be at Atkinson Hall at 1:00p.m.

See you soon,
Carolina

---------- Forwarded message ----------
From: Samir Das <samirdas99 at gmail.com<mailto:samirdas99 at gmail.com>>
Date: Mon, Mar 27, 2017 at 11:14 AM
Subject: Re: errors in installation of LORIS
To: Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>>
Cc: Christine Rogers <mni.crogers at gmail.com<mailto:mni.crogers at gmail.com>>


I think that these are all just warnings. We should definitely fix them. It happens as version of software (PHP for example) changes. Is the installation working? Or are these warnings causing it to fail?

It might be a good idea to send this to loris-dev mailing list so that everyone can see and then we can tackle them. Thanks.

Samir Das

On Mon, Mar 27, 2017 at 2:07 PM, Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>> wrote:
Hi guys,
Hauke is running into some errors with the installation of LORIS. Do any of these errors ring a bell to you? Let me know if you prefer that I forward this to the LORIS help mailing list.

Thanks!

Carolina

---------- Forwarded message ----------
From: Bartsch, Hauke <hbartsch at ucsd.edu<mailto:hbartsch at ucsd.edu>>
Date: Mon, Mar 27, 2017 at 10:47 AM
Subject: Re: setting up LORIS- Github wiki page
To: Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>>


Still all kinds of error messages with the installation:

<PastedGraphic-3.png>


On Mar 27, 2017, at 10:45 AM, Bartsch, Hauke <hbartsch at ucsd.edu<mailto:hbartsch at ucsd.edu>> wrote:


    http://169.228.56.161/

User: lorisadmin
Pw: ucsd!1234

  Hauke

On Mar 24, 2017, at 3:47 PM, Carolina Makowski <carolina.mak3 at gmail.com<mailto:carolina.mak3 at gmail.com>> wrote:

https://github.com/aces/Loris/wiki/Setup

Will get back to you as soon as I hear from Christine regarding REDCap-LORIS hooks.
Looking forward to seeing how this turns out!

Cheers,
Carolina








_______________________________________________
Loris-dev mailing list
Loris-dev at bic.mni.mcgill.ca<mailto:Loris-dev at bic.mni.mcgill.ca>
http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev


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