[Loris-dev] Imaging Browser Headers and Data Query Tool

[Michael Joseph]

Thank you Dave,


Yes, QCing the scans allowed them to show up in the data query tool.


Michael

________________________________
From: David MacFarlane, Mr <david.macfarlane2 at mcgill.ca>
Sent: June 20, 2017 9:59:50 AM
To: Michael Joseph; loris-dev at bic.mni.mcgill.ca
Subject: Re: Imaging Browser Headers and Data Query Tool


hi Michael,


The "mri_data" in the data query tool only shows information for modalities which are inserted and have a scan selected in the imaging browser to avoid showing all the scan types which aren't acquired in your LORIS instance. The QCComment in a session level variable, so it gets inserted regardless. The demographics would be working because it's entirely candidate based and not data-dependant.


If you QC some of the scans that you've inserted into LORIS (including choosing "Selected=true" for exactly one scan of each modality that you want to see in the DQT per session), then rerun the CouchDB_MRI_Import script, I believe it should show up in the data query tool.


- Dave

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From: loris-dev-bounces at bic.mni.mcgill.ca <loris-dev-bounces at bic.mni.mcgill.ca> on behalf of Michael Joseph <michael.joseph at sickkids.ca>
Sent: June 6, 2017 11:31:44 AM
To: loris-dev at bic.mni.mcgill.ca
Subject: [Loris-dev] Imaging Browser Headers and Data Query Tool


Hi Loris dev team,


I have two queries:


1) I've been uploading images to Loris though the back-end using the dicomTar.pl and tarchiveLoader scripts. I noticed that the headers for each scan in the Imaging Browser module are incomplete. Only the 'Output Type', 'Space', 'Protocol' and 'Inserted Date' fields show up correctly. The 'Voxel Size', 'Echo Time', 'Rep Time', Slice Thick' and 'Number of volumes' all report 0. The rest of the fields are empty. Did I miss a step that populates the headers?


2) I also recently set up the Data Query Tool. For the 'mri_data' instrument, the only filter I get is 'QCComment'. The 'demographics' instrument is working properly. Do you have any ideas why the rest of the filters don't appear?


Thank you,


Michael

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