[Loris-dev] Registering minc files to LORIS

[Mouna Safi-Harab]

One thing I should add to the email below is to click on the "all_types" under "Links" in Imaging Browser (as opposed to "native"; in case this is where your issue is coming from).


- Mouna

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From: loris-dev-bounces at bic.mni.mcgill.ca <loris-dev-bounces at bic.mni.mcgill.ca> on behalf of Mouna Safi-Harab <mouna.safi-harb at mail.mcgill.ca>
Sent: Thursday, July 27, 2017 4:06:29 PM
To: Michael Joseph; loris-dev at bic.mni.mcgill.ca
Subject: Re: [Loris-dev] Registering minc files to LORIS


Hi Michael,


Yes, what you see in Imaging browser is the jpg version (in /data/$PROJ/data/pics/ folder) of the minc file (from the /data/$PROJ/data/assembly/...etc folder). If you do not generate those using make_pics, they won't show in Imaging Browser because they don't exist in the first place. Clicking on the image, once it shows up, will launch brainbrowser with the corresponding minc file for browsing/viewing.


make_jiv() is needed if you are using the jiv version to view images, otherwise, it is not necessary.


- Mouna



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From: loris-dev-bounces at bic.mni.mcgill.ca <loris-dev-bounces at bic.mni.mcgill.ca> on behalf of Michael Joseph <michael.joseph at sickkids.ca>
Sent: Thursday, July 27, 2017 11:19:57 AM
To: loris-dev at bic.mni.mcgill.ca
Subject: [Loris-dev] Registering minc files to LORIS


Hi Loris dev team,


For our Loris instance, we have a bunch of mouse imaging data in minc files. I created a wrapper around the registerFile.pl script to add the files to the database. The files are added successfully and all the metadata is in the parameter_file table. However, I can't see the images through the Imaging Browser module. They are only visible by viewing imaging data through the candidate Access Profile page. Would you have any thoughts as to why that is?


Should the make_pics and make_jiv subroutines from MRI.pm also be added to view the files in Brainbrowser?


Also, I occasionally get some errors from HDF5. I've attached them here.


Michael

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