From waveflux at gmail.com  Mon Apr  4 15:09:36 2016
From: waveflux at gmail.com (Tom Beaudry)
Date: Mon, 4 Apr 2016 15:09:36 -0400
Subject: [Loris-dev] fixing a bad visit label
Message-ID: <CALzz+FNdMQqhwMFTgya+qW_AD0TqzMV5Wa9H-fw+=3wmBVAABw@mail.gmail.com>

Hi guys,

I have a data entry staff that entered in "v1"  instead of "V1" for a visit
label.  What tables do i need to modify in the back end?

Thanks!
Tom
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From christine.rogers at mcgill.ca  Mon Apr  4 20:50:27 2016
From: christine.rogers at mcgill.ca (Christine Rogers)
Date: Mon, 4 Apr 2016 20:50:27 -0400
Subject: [Loris-dev] fixing a bad visit label
In-Reply-To: <CALzz+FNdMQqhwMFTgya+qW_AD0TqzMV5Wa9H-fw+=3wmBVAABw@mail.gmail.com>
References: <CALzz+FNdMQqhwMFTgya+qW_AD0TqzMV5Wa9H-fw+=3wmBVAABw@mail.gmail.com>
Message-ID: <CALbt7NCAwH6cS2G42DFwkxUUxMx7xi7VaC10C_qqz1HT_pNxsw@mail.gmail.com>

Hi Tom,

If you mean that a subject's visit/timepoint was incorrectly labelled "v1"
 when it was registered in the Loris front-end --

The only table you should need to modify is the session table -- see
the Visit_label
column in the session table.
It's a very quick MySQL Update statement to change this column's value for
that one subject's specific session record.

The session table's ID field is the primary key (referenced by other
tables) so the visit label itself doesn't get stored in many tables.

Best,
Christine
-- 
LORIS data systems | loris.ca
McGill Centre for Integrative Neuroscience| MCIN.ca
McConnell Brain Imaging Centre
Montreal Neurological Institute
McGill University | Montreal | Canada


On Mon, Apr 4, 2016 at 3:09 PM, Tom Beaudry <waveflux at gmail.com> wrote:

> Hi guys,
>
> I have a data entry staff that entered in "v1"  instead of "V1" for a
> visit label.  What tables do i need to modify in the back end?
>
> Thanks!
> Tom
>
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
>
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From Naveen.Ashish at loni.usc.edu  Wed Apr 13 16:15:47 2016
From: Naveen.Ashish at loni.usc.edu (Naveen Ashish)
Date: Wed, 13 Apr 2016 20:15:47 +0000
Subject: [Loris-dev] LORIS error on start up ...
Message-ID: <577b9daf3b68468fac541c7590782314@ex01.ini.usc.edu>

Hello,
I am trying to get Loris running under Ubuntu. I went through the Install Script and I think all ok and the following steps too. However on attempting to access the main page I get an error related to not finding a PP file which is ../vendor/autoload.php

And I see I do not have a "vendor" folder or that PHP file in my Loris directory at all !

I am enclosing the error below:

Warning: require_once(/var/www/loris/htdocs/../vendor/autoload.php): failed to open stream: No such file or directory in /var/www/loris/htdocs/main.php on line20

Fatal error: require_once(): Failed opening required '/var/www/loris/htdocs/../vendor/autoload.php' (include_path='.:/usr/share/php:/usr/share/pear:/var/www/loris/project/libraries:/var/www/loris/php/libraries:../project/libraries:../php/libraries:') in/var/www/loris/htdocs/main.php on line 20


Naveen Ashish
The Institute for Neuroimaging and Informatics
Keck School of Medicine of USC
University of Southern California
2001 North Soto Street - Room 102
Los Angeles, CA 90032
Phone: (323) 442-0142
nashish at loni.usc.edu<mailto:nashish at loni.usc.edu>
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From christine.rogers at mcgill.ca  Thu Apr 14 06:03:12 2016
From: christine.rogers at mcgill.ca (Christine Rogers)
Date: Thu, 14 Apr 2016 11:03:12 +0100
Subject: [Loris-dev] LORIS error on start up ...
In-Reply-To: <577b9daf3b68468fac541c7590782314@ex01.ini.usc.edu>
References: <577b9daf3b68468fac541c7590782314@ex01.ini.usc.edu>
Message-ID: <CALbt7NAdy6POjjOTSRYijti1x9trVjCge1KWc8Z_hPu9bw6MZA@mail.gmail.com>

Hi Naveen,

I believe your issue is related to the installation of Composer, the
package manager software Loris uses to manage dependencies.

For your Ubuntu setup, try installing Composer thus (per the wiki)
<https://github.com/aces/Loris/wiki/Install-Script#troubleshooting> from
/var/www/loris  :

  curl -sS https://getcomposer.org/installer | php;
  sudo mv composer.phar /usr/local/bin/composer
  composer install


This should create your $lorisroot/vendor/autoload.php

Feel free to let me know if you have further questions --
Best,
Christine
-- 
LORIS data systems | loris.ca
McGill Centre for Integrative Neuroscience| MCIN.ca
Montreal Neurological Institute
McGill University | Montreal | Canada


On Wed, Apr 13, 2016 at 9:15 PM, Naveen Ashish <Naveen.Ashish at loni.usc.edu>
wrote:

> Hello,
> I am trying to get Loris running under Ubuntu. I went through the Install
> Script and I think all ok and the following steps too. However on
> attempting to access the main page I get an error related to not finding a
> PP file which is *../vendor/autoload.php*
>
> And I see I do not have a "vendor" folder or that PHP file in my Loris
> directory at all !
>
> I am enclosing the error below:
>
> *Warning*: require_once(/var/www/loris/htdocs/../vendor/autoload.php):
> failed to open stream: No such file or directory in
> */var/www/loris/htdocs/main.php* on line*20*
>
> *Fatal error*: require_once(): Failed opening required
> '/var/www/loris/htdocs/../vendor/autoload.php'
> (include_path='.:/usr/share/php:/usr/share/pear:/var/www/loris/project/libraries:/var/www/loris/php/libraries:../project/libraries:../php/libraries:')
> in*/var/www/loris/htdocs/main.php* on line *20*
>
>
> Naveen Ashish
> The Institute for Neuroimaging and Informatics
> Keck School of Medicine of *USC*
> University of Southern California
> 2001 North Soto Street - Room 102
> Los Angeles, CA 90032
> Phone: (323) 442-0142
> nashish at loni.usc.edu
>
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
>
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From Naveen.Ashish at loni.usc.edu  Thu Apr 14 11:26:02 2016
From: Naveen.Ashish at loni.usc.edu (Naveen Ashish)
Date: Thu, 14 Apr 2016 15:26:02 +0000
Subject: [Loris-dev] LORIS error on start up ...
In-Reply-To: <CALbt7NAdy6POjjOTSRYijti1x9trVjCge1KWc8Z_hPu9bw6MZA@mail.gmail.com>
References: <577b9daf3b68468fac541c7590782314@ex01.ini.usc.edu>,
	<CALbt7NAdy6POjjOTSRYijti1x9trVjCge1KWc8Z_hPu9bw6MZA@mail.gmail.com>
Message-ID: <ff3d26c35b514482a321aa00ab5dd87e@ex01.ini.usc.edu>

Hi Christine,
Thank you for your prompt response ! That was exactly the problem and now
it stands fixed !

Best
 - Naveen

Naveen Ashish
The Institute for Neuroimaging and Informatics
Keck School of Medicine of USC
University of Southern California
2001 North Soto Street - Room 102
Los Angeles, CA 90032
Phone: (323) 442-0142
nashish at loni.usc.edu<mailto:nashish at loni.usc.edu>

________________________________
From: Christine Rogers <christine.rogers at mcgill.ca>
Sent: Thursday, April 14, 2016 3:03 AM
To: Naveen Ashish
Cc: loris-dev at bic.mni.mcgill.ca
Subject: Re: [Loris-dev] LORIS error on start up ...

Hi Naveen,

I believe your issue is related to the installation of Composer, the package manager software Loris uses to manage dependencies.

For your Ubuntu setup, try installing Composer thus (per the wiki)<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_aces_Loris_wiki_Install-2DScript-23troubleshooting&d=CwMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=iGECOgwoEXnbC6xW4RxIV7EZeQE9tNG_sxnino1-llw&m=XdSkpOWkBEfnOvBiN_6ILGdqjAOSsdd8ID8k31eBYKs&s=5y-RD9TbOvVwNUR5L0O4WOWCHEGM8YbyRgchmMXRP2Y&e=> from /var/www/loris  :

  curl -sS https://getcomposer.org/installer<https://urldefense.proofpoint.com/v2/url?u=https-3A__getcomposer.org_installer&d=CwMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=iGECOgwoEXnbC6xW4RxIV7EZeQE9tNG_sxnino1-llw&m=XdSkpOWkBEfnOvBiN_6ILGdqjAOSsdd8ID8k31eBYKs&s=Em40jky-y8lvXnwQz4TFAl0Sc3cB6MQ5bvFlq5JtCuk&e=> | php;
  sudo mv composer.phar /usr/local/bin/composer
  composer install

This should create your $lorisroot/vendor/autoload.php

Feel free to let me know if you have further questions --
Best,
Christine
--
LORIS data systems | loris.ca<https://urldefense.proofpoint.com/v2/url?u=http-3A__loris.ca_&d=CwMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=iGECOgwoEXnbC6xW4RxIV7EZeQE9tNG_sxnino1-llw&m=XdSkpOWkBEfnOvBiN_6ILGdqjAOSsdd8ID8k31eBYKs&s=nsQ8lni2sYShV8QVnY6XSZIUKh955eoD2awd4RpbuAI&e=>
McGill Centre for Integrative Neuroscience| MCIN.ca
Montreal Neurological Institute
McGill University | Montreal | Canada


On Wed, Apr 13, 2016 at 9:15 PM, Naveen Ashish <Naveen.Ashish at loni.usc.edu<mailto:Naveen.Ashish at loni.usc.edu>> wrote:
Hello,
I am trying to get Loris running under Ubuntu. I went through the Install Script and I think all ok and the following steps too. However on attempting to access the main page I get an error related to not finding a PP file which is ../vendor/autoload.php

And I see I do not have a "vendor" folder or that PHP file in my Loris directory at all !

I am enclosing the error below:

Warning: require_once(/var/www/loris/htdocs/../vendor/autoload.php): failed to open stream: No such file or directory in /var/www/loris/htdocs/main.php on line20

Fatal error: require_once(): Failed opening required '/var/www/loris/htdocs/../vendor/autoload.php' (include_path='.:/usr/share/php:/usr/share/pear:/var/www/loris/project/libraries:/var/www/loris/php/libraries:../project/libraries:../php/libraries:') in/var/www/loris/htdocs/main.php on line 20


Naveen Ashish
The Institute for Neuroimaging and Informatics
Keck School of Medicine of USC
University of Southern California
2001 North Soto Street - Room 102
Los Angeles, CA 90032
Phone: (323) 442-0142<tel:%28323%29%20442-0142>
nashish at loni.usc.edu<mailto:nashish at loni.usc.edu>

_______________________________________________
Loris-dev mailing list
Loris-dev at bic.mni.mcgill.ca<mailto:Loris-dev at bic.mni.mcgill.ca>
http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bic.mni.mcgill.ca_mailman_listinfo_loris-2Ddev&d=CwMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=iGECOgwoEXnbC6xW4RxIV7EZeQE9tNG_sxnino1-llw&m=XdSkpOWkBEfnOvBiN_6ILGdqjAOSsdd8ID8k31eBYKs&s=8cTpSBjimEyTpyIEJD_AdgXE6HVSh_GDqu15BZz-u2A&e=>




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