From david.macfarlane2 at mcgill.ca Tue Mar 3 12:07:51 2015 From: david.macfarlane2 at mcgill.ca (Dave MacFarlane) Date: Tue, 3 Mar 2015 12:07:51 -0500 Subject: [Loris-dev] Reminder: Loris Dev Workshop TODAY at 3:30pm Message-ID: Hi all, Just a quick reminder that the second Loris Developer's Workshop will be today at 3:30pm in room BT-100. (Note that this isn't the same room as last time, it's in the same area but 2 floors up.) Hope to see you there, - Dave -------------- next part -------------- An HTML attachment was scrubbed... URL: From david.macfarlane2 at mcgill.ca Thu Mar 5 15:54:52 2015 From: david.macfarlane2 at mcgill.ca (Dave MacFarlane) Date: Thu, 5 Mar 2015 15:54:52 -0500 Subject: [Loris-dev] Loris Developer Workshop, Part 3 - Instruments - March 17, 2015 - 2:30-3:30 - BT100 Message-ID: Hello again, As discussed at the end of the previous Loris Dev Workshop, we'll be having a change of speaker for the next session and Rathi Gnanasekranwill be explaining all that needs to be known about developing Loris instruments. This should be a more hands on workshop than the previoustalks I've been giving, and I'd recommend any current Loris user/developers who are responsible for ongoing studies attend, as instruments areone of the most important parts of data collection in Loris and Rathi has a lot of experience writing them. Note the change of time to be on Tuesday March 17 2:30-3:30pm. (All meeting rooms were booked at the previous timeslot.) It'll be in BT100again. - Dave -------------- next part -------------- An HTML attachment was scrubbed... URL: From sekaranrathi at gmail.com Fri Mar 6 16:18:46 2015 From: sekaranrathi at gmail.com (Rathi Gnanasekaran) Date: Fri, 6 Mar 2015 16:18:46 -0500 Subject: [Loris-dev] Release 14.12.1 Message-ID: Hi Everyone, The new minor release 14.12.1 is now available on Github . This release intends to fix some of the bugs with our backend scripts in the tools directory. There are no caveats for existing projects so upgrading to this release should be fairly simple. For more information, code changes etc please refer to the Loris Github page. Thanks, Rathi -------------- next part -------------- An HTML attachment was scrubbed... URL: From david.macfarlane2 at mcgill.ca Wed Mar 11 13:11:17 2015 From: david.macfarlane2 at mcgill.ca (Dave MacFarlane) Date: Wed, 11 Mar 2015 13:11:17 -0400 Subject: [Loris-dev] Loris Developer Workshop, Part 3 - Instruments - March 17, 2015 - 2:30-3:30 - Bell Room In-Reply-To: References: Message-ID: There's been a change of venue. The workshop will now be held at the time time (Tuesday March 17 2:30-3:30) in the Bell Room (the same room as the first workshop.) Otherdetails are unchanged. - Dave From: david.macfarlane2 at mcgill.ca To: loris-dev at bic.mni.mcgill.ca Subject: Loris Developer Workshop, Part 3 - Instruments - March 17, 2015 - 2:30-3:30 - BT100 Date: Thu, 5 Mar 2015 15:54:52 -0500 Hello again, As discussed at the end of the previous Loris Dev Workshop, we'll be having a change of speaker for the next session and Rathi Gnanasekranwill be explaining all that needs to be known about developing Loris instruments. This should be a more hands on workshop than the previoustalks I've been giving, and I'd recommend any current Loris user/developers who are responsible for ongoing studies attend, as instruments areone of the most important parts of data collection in Loris and Rathi has a lot of experience writing them. Note the change of time to be on Tuesday March 17 2:30-3:30pm. (All meeting rooms were booked at the previous timeslot.) It'll be in BT100again. - Dave -------------- next part -------------- An HTML attachment was scrubbed... URL: From klitinas at umich.edu Wed Mar 11 13:25:51 2015 From: klitinas at umich.edu (Krisanne Litinas) Date: Wed, 11 Mar 2015 13:25:51 -0400 Subject: [Loris-dev] Loris issues with updating some SQL tables (dealing with instruments) Message-ID: Hi all, I'm working on configuring a Loris instance using the newly-released 14.12.1 package. For right now I'm trying mostly to get instruments set up and then able to be queried via the DQT. I am running into a few issues mainly in regards to SQL update statements - I'm wondering if they are related and may point to some other issue in my system configuration: - For any instrument that I've tried, I have no issues seeing and interacting with the form on the front end. But then when I click the Save Data button it gives me the error that the Update statement could not execute successfully. However, when I look at the update statement it's attempting (I have showDatabaseQueries set to 1), nothing looks out of order and I can actually execute it just fine via command line. I'm having this problem with instruments created from the instrument builder as well as from scratch. My apache logs are giving warnings about CertificationInstruments and CertificationProject variables not being defined in NDB_BVL_Instrument.class.inc, but I don't know if that's related or not. - Sidestepping the first issue for now, I also was trying to execute the data_dictionary_builder.php script on an instrument to send it to the DQT. Again I get an error when it tries to do an SQL insert... yet I can execute that insert statement just fine via terminal. It does update the parameter_type_category table as expected, but errors out when it gets to the point of writing to parameter_type. Wondering if anyone can think of anything obvious to check? I'd appreciate any ideas. Thanks, -Krisanne -------------- next part -------------- An HTML attachment was scrubbed... URL: From justinkat at gmail.com Wed Mar 11 13:42:51 2015 From: justinkat at gmail.com (Justin Kat) Date: Wed, 11 Mar 2015 13:42:51 -0400 Subject: [Loris-dev] Loris issues with updating some SQL tables (dealing with instruments) In-Reply-To: References: Message-ID: Hi Krisanne, My initial guess would be to check that you are logging into mysql from the command line using the same user as the one you have specified in your config.xml file. It seems to me like you are running into issues at points where you need to issue UPDATE and INSERT statements, and therefore I am inclined to believe that it may be a mysql user privilege issue so I would check that the user is properly granted sufficient privileges. Justin On Wed, Mar 11, 2015 at 1:25 PM, Krisanne Litinas wrote: > Hi all, > > I'm working on configuring a Loris instance using the newly-released > 14.12.1 package. For right now I'm trying mostly to get instruments set up > and then able to be queried via the DQT. I am running into a few issues > mainly in regards to SQL update statements - I'm wondering if they are > related and may point to some other issue in my system configuration: > > > - For any instrument that I've tried, I have no issues seeing and > interacting with the form on the front end. But then when I click the Save > Data button it gives me the error that the Update statement could not > execute successfully. However, when I look at the update statement it's > attempting (I have showDatabaseQueries set to 1), nothing looks out of > order and I can actually execute it just fine via command line. I'm having > this problem with instruments created from the instrument builder as well > as from scratch. My apache logs are giving warnings about > CertificationInstruments and CertificationProject variables not being > defined in NDB_BVL_Instrument.class.inc, but I don't know if that's related > or not. > > - Sidestepping the first issue for now, I also was trying to execute > the data_dictionary_builder.php script on an instrument to send it to the > DQT. Again I get an error when it tries to do an SQL insert... yet I can > execute that insert statement just fine via terminal. It does update the > parameter_type_category table as expected, but errors out when it gets to > the point of writing to parameter_type. > > > Wondering if anyone can think of anything obvious to check? I'd > appreciate any ideas. > > Thanks, > -Krisanne > > _______________________________________________ > Loris-dev mailing list > Loris-dev at bic.mni.mcgill.ca > http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From klitinas at umich.edu Wed Mar 11 13:54:27 2015 From: klitinas at umich.edu (Krisanne Litinas) Date: Wed, 11 Mar 2015 13:54:27 -0400 Subject: [Loris-dev] Loris issues with updating some SQL tables (dealing with instruments) In-Reply-To: References: Message-ID: Hi Justin, Thanks for the quick response. That was my first thought as well, but it is the same user. And it seems that via the front end / data_dictionary_builder.php script I can update some tables but not others and it is not apparent to me why this could be. -Krisanne On Wed, Mar 11, 2015 at 1:42 PM, Justin Kat wrote: > Hi Krisanne, > > My initial guess would be to check that you are logging into mysql from > the command line using the same user as the one you have specified in your > config.xml file. It seems to me like you are running into issues at points > where you need to issue UPDATE and INSERT statements, and therefore I am > inclined to believe that it may be a mysql user privilege issue so I would > check that the user is properly granted sufficient privileges. > > Justin > > On Wed, Mar 11, 2015 at 1:25 PM, Krisanne Litinas > wrote: > >> Hi all, >> >> I'm working on configuring a Loris instance using the newly-released >> 14.12.1 package. For right now I'm trying mostly to get instruments set up >> and then able to be queried via the DQT. I am running into a few issues >> mainly in regards to SQL update statements - I'm wondering if they are >> related and may point to some other issue in my system configuration: >> >> >> - For any instrument that I've tried, I have no issues seeing and >> interacting with the form on the front end. But then when I click the Save >> Data button it gives me the error that the Update statement could not >> execute successfully. However, when I look at the update statement it's >> attempting (I have showDatabaseQueries set to 1), nothing looks out of >> order and I can actually execute it just fine via command line. I'm having >> this problem with instruments created from the instrument builder as well >> as from scratch. My apache logs are giving warnings about >> CertificationInstruments and CertificationProject variables not being >> defined in NDB_BVL_Instrument.class.inc, but I don't know if that's related >> or not. >> >> - Sidestepping the first issue for now, I also was trying to execute >> the data_dictionary_builder.php script on an instrument to send it to the >> DQT. Again I get an error when it tries to do an SQL insert... yet I can >> execute that insert statement just fine via terminal. It does update the >> parameter_type_category table as expected, but errors out when it gets to >> the point of writing to parameter_type. >> >> >> Wondering if anyone can think of anything obvious to check? I'd >> appreciate any ideas. >> >> Thanks, >> -Krisanne >> >> _______________________________________________ >> Loris-dev mailing list >> Loris-dev at bic.mni.mcgill.ca >> http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From david.macfarlane2 at mcgill.ca Mon Mar 16 11:39:36 2015 From: david.macfarlane2 at mcgill.ca (Dave MacFarlane) Date: Mon, 16 Mar 2015 11:39:36 -0400 Subject: [Loris-dev] REMINDER: Loris Developer Workshop, Part 3 - Instruments - March 17, 2015 - 2:30-3:30 - Bell Room In-Reply-To: References: , Message-ID: Just a quick reminder that tomorrow Rathi will be presenting a workshop on Loris Instrument Writing at 2:30pm in the Bell Room. Hope to see you all there,- Dave From: david.macfarlane2 at mcgill.ca To: loris-dev at bic.mni.mcgill.ca Subject: Loris Developer Workshop, Part 3 - Instruments - March 17, 2015 - 2:30-3:30 - BT100 Date: Thu, 5 Mar 2015 15:54:52 -0500 Hello again, As discussed at the end of the previous Loris Dev Workshop, we'll be having a change of speaker for the next session and Rathi Gnanasekranwill be explaining all that needs to be known about developing Loris instruments. This should be a more hands on workshop than the previoustalks I've been giving, and I'd recommend any current Loris user/developers who are responsible for ongoing studies attend, as instruments areone of the most important parts of data collection in Loris and Rathi has a lot of experience writing them. Note the change of time to be on Tuesday March 17 2:30-3:30pm. (All meeting rooms were booked at the previous timeslot.) It'll be in Bell Roomagain. - Dave -------------- next part -------------- An HTML attachment was scrubbed... URL: From david.macfarlane2 at mcgill.ca Wed Mar 25 15:42:41 2015 From: david.macfarlane2 at mcgill.ca (Dave MacFarlane) Date: Wed, 25 Mar 2015 15:42:41 -0400 Subject: [Loris-dev] Loris Developer Workshop Part 4 - March 31, 2:30-3:30 - BT100 Message-ID: Hello again, Just a reminder that, as discussed at the end of the last workshop, the next Loris Developers Workshop will be Tuesday March 31, 2015 2:30-3:30 in BT-100. Rathi will be continuing to demonstrate the ins and outs of writing Loris instruments. She plans on talking about using the instrument builder, and basic rules. Any Loris developers who will need to write instruments for their projects should attend this workshop. I'll send a reminder the day before. - Dave P.S. Also of possible interest: on Monday, Samir will be giving a BIC talk on "BIC Infrastructure Software: LORIS, CBRAIN and More" in de Grandpre -------------- next part -------------- An HTML attachment was scrubbed... URL: From david.macfarlane2 at mcgill.ca Mon Mar 30 12:34:29 2015 From: david.macfarlane2 at mcgill.ca (Dave MacFarlane) Date: Mon, 30 Mar 2015 12:34:29 -0400 Subject: [Loris-dev] REMINDER: RE: Loris Developer Workshop Part 4 - March 31, 2:30-3:30 - BT100 In-Reply-To: References: Message-ID: Reminder, part 2 of Rathi's workshop on instrument writing will be tomorrow. - Dave From: david.macfarlane2 at mcgill.ca To: loris-dev at bic.mni.mcgill.ca Date: Wed, 25 Mar 2015 15:42:41 -0400 Subject: [Loris-dev] Loris Developer Workshop Part 4 - March 31, 2:30-3:30 - BT100 Hello again, Just a reminder that, as discussed at the end of the last workshop, the next Loris Developers Workshop will be Tuesday March 31, 2015 2:30-3:30 in BT-100. Rathi will be continuing to demonstrate the ins and outs of writing Loris instruments. She plans on talking about using the instrument builder, and basic rules. Any Loris developers who will need to write instruments for their projects should attend this workshop. I'll send a reminder the day before. - Dave P.S. Also of possible interest: on Monday, Samir will be giving a BIC talk on "BIC Infrastructure Software: LORIS, CBRAIN and More" in de Grandpre _______________________________________________ Loris-dev mailing list Loris-dev at bic.mni.mcgill.ca http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev -------------- next part -------------- An HTML attachment was scrubbed... URL: