From muet0005 at gmail.com  Mon Aug 11 12:11:25 2014
From: muet0005 at gmail.com (Ryan Muetzel)
Date: Mon, 11 Aug 2014 18:11:25 +0200
Subject: [Loris-dev] loris install.sh
Message-ID: <56AA84A8-8D28-4C1D-9820-FAF306ADF703@gmail.com>

Dear Loris experts,

I'm trying to install loris on an ubuntu vm (vmware fusion, ubuntu 14.04). I created a fork to my git account on Saturday (thus I think a relatively recent version).

I'm at the point in the installation guide (google doc) where you run ./install.sh from the tools folder.  All previous steps (I think) went smoothly.

Here is the message I get when running the install script:


########

Ready to continue? [yn] y

Enter project name: genr
Could not find schema file; make sure the current directory is in tools/ under the distribution.

########

I assumed that this point was custom to each site....in our case, our study name "genr" could be used.

In the installation script, I see a conditional statement looking for some SQL code:

# Check that we're running in the proper directory structure.
if [ ! -f ../../$projectname/SQL/0000-00-00-schema.sql ] ; then
    echo "Could not find schema file; make sure the current directory is in tools/ under the distribution."
    exit 2
fi


The only folder in "../../" is the "loris" folder that was created in the first step of the guide (i.e., sudo mkdir -m 775 -p /var/www/loris).  So, when I specify a project name of "genr", this of course doesn't exist yet....the only project name I can specify here, I think without first creating the new structure myself, is "loris"? 

I must be missing something very simple here?  Are there prior steps I'm missing where I need to create a project folder and add sql information?

Thank you in advance for your time and help and sorry for such a newbie question! 

Best,

Ryan





From christine.rogers at mcgill.ca  Mon Aug 11 14:18:47 2014
From: christine.rogers at mcgill.ca (Christine Rogers)
Date: Mon, 11 Aug 2014 14:18:47 -0400
Subject: [Loris-dev] loris install.sh
In-Reply-To: <56AA84A8-8D28-4C1D-9820-FAF306ADF703@gmail.com>
References: <56AA84A8-8D28-4C1D-9820-FAF306ADF703@gmail.com>
Message-ID: <CALbt7NAuEFQ4rg_mOBxkqo9CD12w=O_-+GMdq6tH_2GgOkDhVg@mail.gmail.com>

Hi Ryan,
Thanks for letting us know about this issue.
We did push some changes to the Install script right before the
weekend, and have just today adjusted the Install Guide documentation
to match.
So it seems that you got the code but not the right instructions
during that interval of time when they were out of sync - apologies
for the confusion here.

Moving your loris directory to your genr project directory (sudo mv
/var/www/loris /var/www/genr ), and then re-running the install script
should work.
If you encounter further issues, please don't hesitate to contact me directly.

Best,
Christine
-- 
christine.rogers at mcgill.ca
LORIS data systems
MCIN | McConnell Brain Imaging Centre
Montreal Neurological Institute



On Mon, Aug 11, 2014 at 12:11 PM, Ryan Muetzel <muet0005 at gmail.com> wrote:
> Dear Loris experts,
>
> I'm trying to install loris on an ubuntu vm (vmware fusion, ubuntu 14.04). I created a fork to my git account on Saturday (thus I think a relatively recent version).
>
> I'm at the point in the installation guide (google doc) where you run ./install.sh from the tools folder.  All previous steps (I think) went smoothly.
>
> Here is the message I get when running the install script:
>
>
> ########
>
> Ready to continue? [yn] y
>
> Enter project name: genr
> Could not find schema file; make sure the current directory is in tools/ under the distribution.
>
> ########
>
> I assumed that this point was custom to each site....in our case, our study name "genr" could be used.
>
> In the installation script, I see a conditional statement looking for some SQL code:
>
> # Check that we're running in the proper directory structure.
> if [ ! -f ../../$projectname/SQL/0000-00-00-schema.sql ] ; then
>     echo "Could not find schema file; make sure the current directory is in tools/ under the distribution."
>     exit 2
> fi
>
>
> The only folder in "../../" is the "loris" folder that was created in the first step of the guide (i.e., sudo mkdir -m 775 -p /var/www/loris).  So, when I specify a project name of "genr", this of course doesn't exist yet....the only project name I can specify here, I think without first creating the new structure myself, is "loris"?
>
> I must be missing something very simple here?  Are there prior steps I'm missing where I need to create a project folder and add sql information?
>
> Thank you in advance for your time and help and sorry for such a newbie question!
>
> Best,
>
> Ryan
>
>
>
>
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev



-- 

christine.rogers at mcgill.ca
514.398.7210
NeuroDevNet LORIS data systems
MCIN | McConnell Brain Imaging Centre
Montreal Neurological Institute