From steffener at gmail.com  Fri Apr  4 15:01:43 2014
From: steffener at gmail.com (Jason Steffener)
Date: Fri, 4 Apr 2014 15:01:43 -0400
Subject: [Loris-dev] Loris install
In-Reply-To: <CADp6MaXuoNDPy8yP_LUnryZW+noo_hhbyEj1QjcfUmTRro14QQ@mail.gmail.com>
References: <CADp6MaV9zDLu3R2SwB6SsYrNuCLkeSuYbOUqSwMX2ffSTBARhA@mail.gmail.com>
	<CALbt7NBDd1qYJXos8RCfst9V31AOGCkGYeM0+Arzv3NO7wSRuw@mail.gmail.com>
	<12933_1395946932_533475B4_12933_30_2_f553eb24d1094dae846683890ae3f637@EXHUB2010-1.campus.MCGILL.CA>
	<CALbt7NDs220nAAkTRy0Ua0x2=knf_rkyUnMN5fL8k+G6RTwJcA@mail.gmail.com>
	<CADp6MaXuoNDPy8yP_LUnryZW+noo_hhbyEj1QjcfUmTRro14QQ@mail.gmail.com>
Message-ID: <CADp6MaV-rVgmS_T2TztVZ6XJR302R7LTi9SQ9JHpFju8+NJVGg@mail.gmail.com>

Dear Christine,
Hello. I narrowed my install problem down to some missing functions in the
CentOS that I am using. Do you happen to have a Virtual machine with LORIS
installed? Or can you point me to a virtual machine which I can install
LORIS to?

Thank you for any guidance.
Jason


On Thu, Mar 27, 2014 at 3:30 PM, Jason Steffener <steffener at gmail.com>wrote:

> I will double check and get back to you on it. It may be a couple of days
> before I can work on this again though.
>
> Thank you again,
> Jason
>
>
> On Thu, Mar 27, 2014 at 3:21 PM, Christine Rogers <
> christine.rogers at mcgill.ca> wrote:
>
>> Hi Jason,
>> Glad the code update worked.
>>
>> Re the apache error:
>> Are all the packages mentioned in section A1 installed on your system?
>> Specifically, Apache2 (libapache2-mod-php5)?
>>
>> Christine
>>
>> On Thu, Mar 27, 2014 at 3:02 PM, Jason Steffener <steffener at gmail.com>
>> wrote:
>> > Dear Christine,
>> > Hello. You were absolutely correct, I was using an old fork of
>> Loris-Trunk.
>> > I "re-forked" and I got further.
>> > But I still get an error!
>> >
>> > And when I go to http://localhost
>> > I still get the apache test page.
>> >
>> > I also pasted the log information below.
>> >
>> > Thank you for any guidance.
>> > Jason
>> >
>> >
>> >
>> >
>> > What is the database name? Loris
>> > Database host? localhost
>> > What MySQL user will Loris connect as? lorisuser
>> > What is the password for MySQL user 'lorisuser'?
>> > Re-enter the password to check for accuracy
>> > Enter the front-end Loris 'admin' user's password:
>> > Re-enter the password to check for accuracy
>> > Existing root MySQL username: root
>> > MySQL password for user 'root':
>> > Re-enter the password to check for accuracy
>> > Enter project name: iLS
>> >
>> > Attempting to create the MySQL database 'Loris' ...
>> >
>> > Attempting to create and grant privileges to MySQL user
>> > 'lorisuser'@'localhost' ...
>> >
>> > Creating database tables from schema.
>> >
>> > Updating Loris admin user's password.
>> >
>> > Creating config file.
>> > Would you like to install PEAR libraries (affects system files)? [yn] n
>> > Not installing PEAR libraries.
>> > Would you like to automatically create/install apache config files?
>> [yn] y
>> > tee: /etc/apache2/sites-available/iLS: No such file or directory
>> > sudo: a2dissite: command not found
>> > sudo: a2ensite: command not found
>> > Installation complete.
>> >
>> >
>> >
>> >
>> >
>> > On Thu, Mar 27, 2014 at 2:17 PM, Christine Rogers
>> > <christine.rogers at mcgill.ca> wrote:
>> >>
>> >> Hi Jason,
>> >> Thanks for your email.
>> >> You may be running an outdated version of the Loris install script, as
>> >> the current version of the Install script doesn't include these
>> >> prompts.
>> >>
>> >> To update your code from aces/master, run (from your /var/www/loris/
>> >> directory):
>> >> > git pull
>> >>
>> >> After you complete the initial installation steps, you should be able
>> >> to log into LORIS at http://localhost (in a browser) on your machine.
>> >>
>> >> Once the install steps are complete, continue on to the Developers
>> >> Guide [
>> >>
>> https://docs.google.com/document/d/129T2SfqzKTTOkoXRykzCLe5Vy70A9Dzjw1O3vqgwsPQ
>> >> ]  -- this will help you configure LORIS for your study / dataset.
>> >>
>> >> Best,
>> >> Christine Rogers
>> >> --
>> >> christine.rogers at mcgill.ca
>> >> LORIS data systems
>> >> ACElabs | McConnell Brain Imaging Centre
>> >> Montreal Neurological Institute
>> >>
>> >>
>> >> On Thu, Mar 27, 2014 at 1:50 PM, Jason Steffener <steffener at gmail.com>
>> >> wrote:
>> >> > Dear Loris developers,
>> >> > I am trying to install LORIS on my system. I get to the top of page
>> 2 of
>> >> > the
>> >> > installation guide. I am running
>> >> > install.sh
>> >> >
>> >> > I get prompted for
>> >> > Enter www host:
>> >> > Enter www url:
>> >> >
>> >> > What do I enter here?
>> >> >
>> >> >
>> >> > And once I complete the install, then what? Where do I access the
>> >> > interface
>> >> > to LORIS to start using it?
>> >> >
>> >> > Thank you,
>> >> > Jason
>> >> >
>> >> >
>> >> >
>> >> > _______________________________________________
>> >> > Loris-dev mailing list
>> >> > Loris-dev at bic.mni.mcgill.ca
>> >> > http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>> >> >
>> >
>> >
>>
>>
>>
>> --
>>
>> christine.rogers at mcgill.ca
>> 514.398.7210
>> NeuroDevNet LORIS data systems
>> ACElabs | McConnell Brain Imaging Centre
>> Montreal Neurological Institute
>>
>
>
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From christine.rogers at mcgill.ca  Thu Apr 10 12:39:00 2014
From: christine.rogers at mcgill.ca (Christine Rogers)
Date: Thu, 10 Apr 2014 12:39:00 -0400
Subject: [Loris-dev] Loris install
In-Reply-To: <9337_1396638120_533F01A8_9337_39_3_5c663a8be77244ecac089543b5d1df3c@EXHUB2010-2.campus.MCGILL.CA>
References: <CADp6MaV9zDLu3R2SwB6SsYrNuCLkeSuYbOUqSwMX2ffSTBARhA@mail.gmail.com>
	<CALbt7NBDd1qYJXos8RCfst9V31AOGCkGYeM0+Arzv3NO7wSRuw@mail.gmail.com>
	<12933_1395946932_533475B4_12933_30_2_f553eb24d1094dae846683890ae3f637@EXHUB2010-1.campus.MCGILL.CA>
	<CALbt7NDs220nAAkTRy0Ua0x2=knf_rkyUnMN5fL8k+G6RTwJcA@mail.gmail.com>
	<CADp6MaXuoNDPy8yP_LUnryZW+noo_hhbyEj1QjcfUmTRro14QQ@mail.gmail.com>
	<9337_1396638120_533F01A8_9337_39_3_5c663a8be77244ecac089543b5d1df3c@EXHUB2010-2.campus.MCGILL.CA>
Message-ID: <CALbt7NC22Ww6dAHy1A3FOUs=yLC+vcNDe8_icZDFeOWSPJKUVw@mail.gmail.com>

Hi Jason,

We offer the LORIS source code and are happy to answer any specific
questions you may have, to the best of our knowledge.  Unfortunately
we're not in a position to offer our own resources to all LORIS
installations.

Could you kindly refresh our memory as to whether you are engaged with
our Julich collaborations, or with any of our other projects?  For
which project are you currently installing LORIS, and who would be
your collaborators?

For active collaborations, we do offer more extensive support and
trouble-shooting.  If you're seeking to establish a collaboration and
set up a VM, Samir Das is the best point of contact (cc'd here).

Thanks,
Christine

-- 
christine.rogers at mcgill.ca
514.398.7210
NeuroDevNet LORIS data systems
ACElabs | McConnell Brain Imaging Centre
Montreal Neurological Institute
McGill University


On Fri, Apr 4, 2014 at 3:01 PM, Jason Steffener <steffener at gmail.com> wrote:
> Dear Christine,
> Hello. I narrowed my install problem down to some missing functions in the
> CentOS that I am using. Do you happen to have a Virtual machine with LORIS
> installed? Or can you point me to a virtual machine which I can install
> LORIS to?
>
> Thank you for any guidance.
> Jason
>
>
> On Thu, Mar 27, 2014 at 3:30 PM, Jason Steffener <steffener at gmail.com>
> wrote:
>>
>> I will double check and get back to you on it. It may be a couple of days
>> before I can work on this again though.
>>
>> Thank you again,
>> Jason
>>
>>
>> On Thu, Mar 27, 2014 at 3:21 PM, Christine Rogers
>> <christine.rogers at mcgill.ca> wrote:
>>>
>>> Hi Jason,
>>> Glad the code update worked.
>>>
>>> Re the apache error:
>>> Are all the packages mentioned in section A1 installed on your system?
>>> Specifically, Apache2 (libapache2-mod-php5)?
>>>
>>> Christine
>>>
>>> On Thu, Mar 27, 2014 at 3:02 PM, Jason Steffener <steffener at gmail.com>
>>> wrote:
>>> > Dear Christine,
>>> > Hello. You were absolutely correct, I was using an old fork of
>>> > Loris-Trunk.
>>> > I "re-forked" and I got further.
>>> > But I still get an error!
>>> >
>>> > And when I go to http://localhost
>>> > I still get the apache test page.
>>> >
>>> > I also pasted the log information below.
>>> >
>>> > Thank you for any guidance.
>>> > Jason
>>> >
>>> >
>>> >
>>> >
>>> > What is the database name? Loris
>>> > Database host? localhost
>>> > What MySQL user will Loris connect as? lorisuser
>>> > What is the password for MySQL user 'lorisuser'?
>>> > Re-enter the password to check for accuracy
>>> > Enter the front-end Loris 'admin' user's password:
>>> > Re-enter the password to check for accuracy
>>> > Existing root MySQL username: root
>>> > MySQL password for user 'root':
>>> > Re-enter the password to check for accuracy
>>> > Enter project name: iLS
>>> >
>>> > Attempting to create the MySQL database 'Loris' ...
>>> >
>>> > Attempting to create and grant privileges to MySQL user
>>> > 'lorisuser'@'localhost' ...
>>> >
>>> > Creating database tables from schema.
>>> >
>>> > Updating Loris admin user's password.
>>> >
>>> > Creating config file.
>>> > Would you like to install PEAR libraries (affects system files)? [yn] n
>>> > Not installing PEAR libraries.
>>> > Would you like to automatically create/install apache config files?
>>> > [yn] y
>>> > tee: /etc/apache2/sites-available/iLS: No such file or directory
>>> > sudo: a2dissite: command not found
>>> > sudo: a2ensite: command not found
>>> > Installation complete.
>>> >
>>> >
>>> >
>>> >
>>> >
>>> > On Thu, Mar 27, 2014 at 2:17 PM, Christine Rogers
>>> > <christine.rogers at mcgill.ca> wrote:
>>> >>
>>> >> Hi Jason,
>>> >> Thanks for your email.
>>> >> You may be running an outdated version of the Loris install script, as
>>> >> the current version of the Install script doesn't include these
>>> >> prompts.
>>> >>
>>> >> To update your code from aces/master, run (from your /var/www/loris/
>>> >> directory):
>>> >> > git pull
>>> >>
>>> >> After you complete the initial installation steps, you should be able
>>> >> to log into LORIS at http://localhost (in a browser) on your machine.
>>> >>
>>> >> Once the install steps are complete, continue on to the Developers
>>> >> Guide [
>>> >>
>>> >> https://docs.google.com/document/d/129T2SfqzKTTOkoXRykzCLe5Vy70A9Dzjw1O3vqgwsPQ
>>> >> ]  -- this will help you configure LORIS for your study / dataset.
>>> >>
>>> >> Best,
>>> >> Christine Rogers
>>> >> --
>>> >> christine.rogers at mcgill.ca
>>> >> LORIS data systems
>>> >> ACElabs | McConnell Brain Imaging Centre
>>> >> Montreal Neurological Institute
>>> >>
>>> >>
>>> >> On Thu, Mar 27, 2014 at 1:50 PM, Jason Steffener <steffener at gmail.com>
>>> >> wrote:
>>> >> > Dear Loris developers,
>>> >> > I am trying to install LORIS on my system. I get to the top of page
>>> >> > 2 of
>>> >> > the
>>> >> > installation guide. I am running
>>> >> > install.sh
>>> >> >
>>> >> > I get prompted for
>>> >> > Enter www host:
>>> >> > Enter www url:
>>> >> >
>>> >> > What do I enter here?
>>> >> >
>>> >> >
>>> >> > And once I complete the install, then what? Where do I access the
>>> >> > interface
>>> >> > to LORIS to start using it?
>>> >> >
>>> >> > Thank you,
>>> >> > Jason
>>> >> >
>>> >> >
>>> >> >
>>> >> > _______________________________________________
>>> >> > Loris-dev mailing list
>>> >> > Loris-dev at bic.mni.mcgill.ca
>>> >> > http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>>> >> >
>>> >
>>> >
>>>
>>>
>>>