From mohaddes at bic.mni.mcgill.ca Wed Oct 10 14:18:58 2012 From: mohaddes at bic.mni.mcgill.ca (zia mohades) Date: Wed, 10 Oct 2012 14:18:58 -0400 Subject: [Loris-dev] Scoring function for some Instruments Message-ID: Hi all, I am currently trying to find out if any project has already coded scoring functions for the instruments in the attached excel file. If so can you please let me know which ones and how I could have access to them. I appreciate your help in advance, Best regards, zia -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Questionnaires with who to for scoring.xls Type: application/vnd.ms-excel Size: 33280 bytes Desc: not available URL: From m.schmidt at erasmusmc.nl Tue Oct 23 06:38:32 2012 From: m.schmidt at erasmusmc.nl (M.N. Schmidt) Date: Tue, 23 Oct 2012 10:38:32 +0000 Subject: [Loris-dev] batch_uploads_tarchive error Message-ID: Hi Loris Gurus, I seem to be having trouble with the "batch_uploads_tarchive" script and am wondering if someone might be able to provide some insight. Here's the command, which was killed after waiting over 25 minutes: lorisadmin at rietveld:/data/genr/bin/mri$ ./batch_uploads_tarchive Name "Settings::is_qsub" used only once: possible typo at ./batch_uploads_tarchive line 51. Use of uninitialized value $_ in pattern match (m//) at ./batch_uploads_tarchive line 16. ^C lorisadmin at rietveld:/data/genr/bin/mri$ Should I be providing an input argument, and if so, what? I'm new to perl, so there's a very good chance I am missing something when I view the code while trying to debug. (It looks like there should be some sort of input, but from the demo, I don't recall needing user input until it's asked for by the script itself.) Also, using the verbose and debug flags only change line number reported for the "uninitialized value" error (referencing the line defining verbose or debug)... no additional output is displayed. Note that the following command successfully imports data into the Loris database, upon which I can use the web viewers, etc: ./copy_and_process_tarchive /data/incoming/ROT/incoming/DCM_2012-01-01__subject_100.tar marcus Any thoughts are greatly appreciated!! Cheers, Marcus ___________________________________ Marcus N Schmidt Erasmus MC - Sophia Department of Child & Adolescent Psychiatry/Psychology Visiting address: Wytemaweg 8, 3015 CN, Rotterdam Postal address: P.O.Box 2060, 3000 CB Rotterdam The Netherlands www.erasmusmc.nl/kinderenjeugdpsychiatrie -------------- next part -------------- An HTML attachment was scrubbed... URL: From david.macfarlane2 at mcgill.ca Tue Oct 23 10:01:38 2012 From: david.macfarlane2 at mcgill.ca (Dave MacFarlane) Date: Tue, 23 Oct 2012 10:01:38 -0400 Subject: [Loris-dev] batch_uploads_tarchive error In-Reply-To: References: Message-ID: You can ignore both of those warnings. Settings::is_qsub is, in fact, only used once, but it's still a config value that's used. The Use of uninitialized value warning has been there for as long as I can remember, but I've never looked into what causes it. It can be safely ignored. The script is waiting for you to give a list of files that you want to be processed from stdin, followed by Ctrl-D. So the input at this point would be something like: ROT DCM_2012-01-01__subject_100.tar ^D I think when we were there, we put the list of files into a file, and then used shell re-direction, which is effectively the same thing. (The reason there's no prompt is that this is usually called from a script/cron job, not manually except when debugging.) - Dave From: m.schmidt at erasmusmc.nl To: loris-dev at bic.mni.mcgill.ca Date: Tue, 23 Oct 2012 10:38:32 +0000 Subject: [Loris-dev] batch_uploads_tarchive error Hi Loris Gurus, I seem to be having trouble with the "batch_uploads_tarchive" script and am wondering if someone might be able to provide some insight. Here's the command, which was killed after waiting over 25 minutes: lorisadmin at rietveld:/data/genr/bin/mri$ ./batch_uploads_tarchive Name "Settings::is_qsub" used only once: possible typo at ./batch_uploads_tarchive line 51. Use of uninitialized value $_ in pattern match (m//) at ./batch_uploads_tarchive line 16. ^C lorisadmin at rietveld:/data/genr/bin/mri$ Should I be providing an input argument, and if so, what? I'm new to perl, so there's a very good chance I am missing something when I view the code while trying to debug. (It looks like there should be some sort of input, but from the demo, I don't recall needing user input until it's asked for by the script itself.) Also, using the verbose and debug flags only change line number reported for the "uninitialized value" error (referencing the line defining verbose or debug)... no additional output is displayed. Note that the following command successfully imports data into the Loris database, upon which I can use the web viewers, etc: ./copy_and_process_tarchive /data/incoming/ROT/incoming/DCM_2012-01-01__subject_100.tar marcus Any thoughts are greatly appreciated!! Cheers, Marcus ___________________________________ Marcus N Schmidt Erasmus MC - Sophia Department of Child & Adolescent Psychiatry/Psychology Visiting address: Wytemaweg 8, 3015 CN, Rotterdam Postal address: P.O.Box 2060, 3000 CB Rotterdam The Netherlands www.erasmusmc.nl/kinderenjeugdpsychiatrie _______________________________________________ Loris-dev mailing list Loris-dev at bic.mni.mcgill.ca http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev -------------- next part -------------- An HTML attachment was scrubbed... URL: From m.schmidt at erasmusmc.nl Wed Oct 24 05:13:13 2012 From: m.schmidt at erasmusmc.nl (M.N. Schmidt) Date: Wed, 24 Oct 2012 09:13:13 +0000 Subject: [Loris-dev] batch_uploads_tarchive error In-Reply-To: References: , Message-ID: That did it. Thanks!!! Sent from my iPad On 23 okt. 2012, at 16:03, "Dave MacFarlane" > wrote: You can ignore both of those warnings. Settings::is_qsub is, in fact, only used once, but it's still a config value that's used. The Use of uninitialized value warning has been there for as long as I can remember, but I've never looked into what causes it. It can be safely ignored. The script is waiting for you to give a list of files that you want to be processed from stdin, followed by Ctrl-D. So the input at this point would be something like: ROT DCM_2012-01-01__subject_100.tar ^D I think when we were there, we put the list of files into a file, and then used shell re-direction, which is effectively the same thing. (The reason there's no prompt is that this is usually called from a script/cron job, not manually except when debugging.) - Dave ________________________________ From: m.schmidt at erasmusmc.nl To: loris-dev at bic.mni.mcgill.ca Date: Tue, 23 Oct 2012 10:38:32 +0000 Subject: [Loris-dev] batch_uploads_tarchive error Hi Loris Gurus, I seem to be having trouble with the "batch_uploads_tarchive" script and am wondering if someone might be able to provide some insight. Here's the command, which was killed after waiting over 25 minutes: lorisadmin at rietveld:/data/genr/bin/mri$ ./batch_uploads_tarchive Name "Settings::is_qsub" used only once: possible typo at ./batch_uploads_tarchive line 51. Use of uninitialized value $_ in pattern match (m//) at ./batch_uploads_tarchive line 16. ^C lorisadmin at rietveld:/data/genr/bin/mri$ Should I be providing an input argument, and if so, what? I'm new to perl, so there's a very good chance I am missing something when I view the code while trying to debug. (It looks like there should be some sort of input, but from the demo, I don't recall needing user input until it's asked for by the script itself.) Also, using the verbose and debug flags only change line number reported for the "uninitialized value" error (referencing the line defining verbose or debug)... no additional output is displayed. Note that the following command successfully imports data into the Loris database, upon which I can use the web viewers, etc: ./copy_and_process_tarchive /data/incoming/ROT/incoming/DCM_2012-01-01__subject_100.tar marcus Any thoughts are greatly appreciated!! Cheers, Marcus ___________________________________ Marcus N Schmidt Erasmus MC - Sophia Department of Child & Adolescent Psychiatry/Psychology Visiting address: Wytemaweg 8, 3015 CN, Rotterdam Postal address: P.O.Box 2060, 3000 CB Rotterdam The Netherlands www.erasmusmc.nl/kinderenjeugdpsychiatrie _______________________________________________ Loris-dev mailing list Loris-dev at bic.mni.mcgill.ca http://www.bic.mni.mcgill.ca/mailman/listinfo/loris-dev -------------- next part -------------- An HTML attachment was scrubbed... URL: