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<p class="MsoNormal"><span style="font-size:11.0pt">Hi Louis,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Many many thanks to you, Mallar and others for keeping MINC running all these years. So much has been accomplished with it.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">As of now, though, my team no longer uses it.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Best wishes,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Marco<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><b><span style="font-size:12.0pt;color:black">From:
</span></b><span style="font-size:12.0pt;color:black">BIC-announce <bic-announce-bounces@bic.mni.mcgill.ca> on behalf of Louis Collins, Mr <louis.collins@mcgill.ca><br>
<b>Date: </b>Monday, May 26, 2025 at 10:23</span><span style="font-size:12.0pt;font-family:"Arial",sans-serif;color:black"> </span><span style="font-size:12.0pt;color:black">AM<br>
<b>To: </b>bic-announce@bic.mni.mcgill.ca <bic-announce@bic.mni.mcgill.ca><br>
<b>Subject: </b>[BIC-announce] the future of MINC and MINC support - need 2 min.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">Hi all, <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">I’m sending this email to bic-annouce, minc-users and minc-developers. Forgive me if you get multiple similar copies, each one has different questions addressed to the specific mailing list audience.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">Along with cutting edge neuro-imaging devices, the MINC software tools are an integral part of the success that have enabled the BIC to achieve world-wide recognition in neuroscience. Unfortunately, a recent
DICOM to MINC conversion issue (left-right flipping in MRI) has called into question the future of minc.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">The minc file format, API, and all image analysis pipelines have been supported mostly on a volunteer basis for at least the past decade. While I’ve never had grants to support minc directly, I’ve used funds
from other projects to support Vlad’s salary as he spent half his time to work on minc tools as we needed them in my lab. We’ve also invested a lot of time (and $$) fixing bugs and assisting other groups with their processing needs. Mallar, Jason, Andrew
and others have done the same. At this time, my grants are running out, and I can no longer afford to support minc as we’ve done in the past. for a few months last fall, Julien provided some financial help (20% of an FTE), but that aid ended early this year.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">I learned about this new dcm2mnc issue last week that affects all those that use Seimens MRI data in minc format acquired in the past few months. <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">This issue calls into the question the sufficiency of <i>volunteer</i> MNC support. Some have suggested to drop MINC altogether and to use other tools based on nifti/BIDS. I believe that MINC support requires
specific funding.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt">For everyone in the bic-announce list, I am curious to know how many people are using MINC at present. </span></b><span style="font-size:12.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt">Please respond with “YES - I’m using MINC” (or "no, not using MINC”).</span></b><span style="font-size:12.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt">If YES, please also say if you’d like to continue using minc. </span></b><span style="font-size:12.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt">If no, would you use minc if it was supported/documented?</span></b><span style="font-size:12.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt">Feel free to reply all in this mailing list, or directly to me by email.</span></b><span style="font-size:12.0pt"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">my goal is to get a count of those using minc tools as soon as possible. there is a meeting this week to discuss the future of minc.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">thanks.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">-Louis<o:p></o:p></span></p>
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