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Hi everyone:
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<div class="">Just released: a considerable extension of our beloved Brainstorm app to basic electrophysiology, from single probes to dense-array recordings. We hope this responds to a major unmet need from the community in terms of user-friendly, free, open
software that is well-supported & documented.</div>
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<div class=""><a href="https://www.nature.com/articles/s41597-019-0242-z" class="">https://www.nature.com/articles/s41597-019-0242-z</a></div>
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<div class="">The app supports a wide diversity of data formats for import/export, incl. BIDS, NeurodataWB, and the new Neuralink probes + MRI / CT volumes.</div>
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<div class="">One convenient and much-useful feature is that Brainstorm now interoperates via GUIs, with leading apps for supervised and unsupervised spike detection and clustering: Waveclus. UltraMegaSort2000, and Kilosort/Klusters. </div>
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<div class="">LFPs are extracted from original signal traces, after applying robust de-spiking (Zanos et al., 2011) + notch + anti-aliasing filtering + downsampling.</div>
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<div class="">LFP traces can then be processed using the extensive toolkit library from Brainstorm, featuring e.g., spectral & time-frequency decompositions, connectivity estimates, inferential statistics, ML decoding, etc. ... and of course, new e-phys tools
more specific to spike/LFP analytics incl.: raster plots, PSTH, tuning curves, noise correlations, spike-field coherence, etc.</div>
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<div class=""><img apple-inline="yes" id="5CC81670-562D-4A3A-9115-4CD13CE4881D" src="cid:CC9CB04F-0B53-4256-A044-EE7827E765A5@campus.mcgill.ca" class=""></div>
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<div class=""><span class="css-16my406 r-1qd0xha r-ad9z0x css-901oao r-bcqeeo r-qvutc0" style="border: 0px solid black; box-sizing: border-box; display: inline; font-stretch: inherit; font-size: 15px; line-height: 1.3125; font-family: system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", sans-serif; margin: 0px; padding: 0px; white-space: pre-wrap; word-wrap: break-word; min-width: 0px;">For
those of you who also collect anatomical images such as MRIs</span><span class="css-16my406 r-1qd0xha r-ad9z0x css-901oao r-bcqeeo r-qvutc0" style="border: 0px solid black; box-sizing: border-box; display: inline; font-stretch: inherit; font-size: 15px; line-height: 1.3125; font-family: system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", sans-serif; margin: 0px; padding: 0px; white-space: pre-wrap; word-wrap: break-word; min-width: 0px;">,
Brainstorm features powerful solutions for 3D and slice visualization, with registration of electrode/array locations + e-phys data.</span></div>
<div class=""><span class="css-16my406 r-1qd0xha r-ad9z0x css-901oao r-bcqeeo r-qvutc0" style="border: 0px solid black; box-sizing: border-box; display: inline; font-stretch: inherit; font-size: 15px; line-height: 1.3125; font-family: system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", sans-serif; margin: 0px; padding: 0px; white-space: pre-wrap; word-wrap: break-word; min-width: 0px;"><img apple-inline="yes" id="2940902D-22C6-466F-8539-3D8FD878789A" src="cid:49D1A303-5E30-4C45-9770-876E827C669C@campus.mcgill.ca" class=""></span></div>
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<div class="">Thanks to all co-authors involved - a collaboration with the Peyrache and Pack labs @ MNI.</div>
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<div class="">Looking forward to your feedback!</div>
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Best wishes,</div>
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Sylvain.</div>
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Sylvain Baillet, PhD</div>
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Professor, Montreal Neurological Institute</div>
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McGill University</div>
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<a href="https://twitter.com/sylvain_baillet" class="">https://twitter.com/sylvain_baillet</a> </div>
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- <a href="https://www.mcgill.ca/neuro/sylvain-baillet-phd" class="">> more</a> </div>
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